[ome-users] Error deploying OMERO 3.2 beta | jboss-log4j.xml

[» Ruben Alves]

Hi Josh, in fact I've already been in that site via Omero's 
troubleshooting page.
My /etc/.java is already world readable and writable, but the error 
continues.
Omero is running as root in a Debian Lenny Linux.
I've installed Java with apt-get and downloaded the official installer. 
In both, I got the same error.
The problem is because of this error, OMERO don't even start.

To deploy omero I use this script:

omero:/var/omero-Beta3.2# cat deploy_server.sh
#!/bin/bash

export http_proxy="http://proxy.lan:8080/"
export JBOSS_HOME=/var/omero-Beta3.2/jboss-4.2.3.GA/
cd /var/omero-Beta3.2/omero
java omero deploy
$JBOSS_HOME/bin/run.sh

Now, I really don't know how to fix this problem.

Regards



» Ruben Alves writes:
 > Hi all,

Hi Ruben,

 > I've just moved to the last omero public release. But I can't > 
understand why I can't deploy omero without this error:
 > > 17:54:59,383 INFO  [Log4jService$URLWatchTimerTask] Configuring 
from > URL: resource:jboss-log4j.xml
 > 2009-03-16 17:55:53,697 ERROR [STDERR] (main) 16/Mar/2009 17:55:53 > 
java.util.prefs.FileSystemPreferences$7 run
 > WARNING: Prefs file removed in background 
/root/.java/.userPrefs/prefs.xml
 > 2009-03-16 17:55:53,719 ERROR [STDERR] (main) 16/Mar/2009 17:55:53 > 
java.util.prefs.FileSystemPreferences$7 run
 > WARNING: Prefs file removed in background 
/etc/.java/.systemPrefs/prefs.xml
 > > I will appreciate any kind of help.

First, is everything working properly despite the error messages? In
our experience, this is an issue with how Java was installed, but is
not detrimental to the server's functioning. This bug in the Sun
database might be of interest:

http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=4751177

 > My best regards,
 > > //Ruben

Hope that helps,
~Josh

-- 
Ruben Alves 

System Analyst 
USI @ Instituto de Medicina Molecular
Edifício Egas Moniz 
Av. Prof. Egas Moniz 1649-028 Lisboa Portugal 
tel: 217999411 ext 47026
rubenalves at fm.ul.pt