[ome-users] Client issues

Mario Valle mvalle at cscs.ch
Tue Mar 10 15:11:14 GMT 2009


(Really I don't know if the list is the correct one, please advise)

So the Beta4 adventure started.

Built the server without big problems (almost...)

Run .insight with a retrieval error, but anyway the db is empty.

So I found a .importer zip file on Hudson and tried it. Besides saying "version 3.1.1",
it crashes importing a tif file with, seems, an out-of-memory error. Instead the messages 
on the console are much more pacific (see below).

Maybe I should calm down and wait for a RC1 also for the clients, isn't it?

Ciao!
	mario



pazzallo ~/Desktop/OMERO.importer-build1841 > ./importer-gui
Starting OMERO.importer...
Suitable java version found [java = 1.5.0_16]
Configuring environment...
Java exec found in PATH. Verifying...
Loading OMERO.importer:
java -Xmx256m -cp 
"./OmeroImporter.jar:./libs/FontBox.jar:./libs/PDFBox.jar:./libs/TableLayout.jar:./libs/activation.jar:./libs/ant.jar:./libs/asm-attrs.jar:./libs/asm.jar:./libs/backport-util-concurrent.jar:./libs/bio-formats.jar:./libs/blitz.jar:./libs/btm.jar:./libs/bufr.jar:./libs/cglib.jar:./libs/checkstyle.jar:./libs/common.jar:./libs/commons-beanutils.jar:./libs/commons-codec.jar:./libs/commons-collections.jar:./libs/commons-httpclient.jar:./libs/commons-io.jar:./libs/commons-lang.jar:./libs/commons-logging.jar:./libs/commons-pool.jar:./libs/dsl.jar:./libs/ehcache.jar:./libs/emma.jar:./libs/emma_ant.jar:./libs/freemarker.jar:./libs/geronimo-spec-jta.jar:./libs/grib.jar:./libs/hibernate-annotations.jar:./libs/hibernate-commons-annotations.jar:./libs/hibernate-search.jar:./libs/hibernate-tools.jar:./libs/hibernate-validator.jar:./libs/hsqldb.jar:./libs/ice-db.jar:./libs/ice.jar:./libs/ij.jar:./libs/importer-common.jar:./libs/importer.jar:./libs/ini4j.jar:./libs/jamon.jar:./libs/java-getop
t.jar:./libs/jsr107cache.jar:./libs/jtidy.jar:./libs/loci-common.jar:./libs/log4j.jar:./libs/lucene-core.jar:./libs/lucene-highlighter.jar:./libs/lucene-spellchecker.jar:./libs/mail.jar:./libs/model-psql.jar:./libs/netcdf.jar:./libs/ome-java.jar:./libs/ome-xml.jar:./libs/omero-clients-util.jar:./libs/omero_client.jar:./libs/persistence-api.jar:./libs/poi-loci.jar:./libs/postgresql.jar:./libs/quaqua-filechooser-only.jar:./libs/quartz.jar:./libs/rendering.jar:./libs/romio.jar:./libs/server.jar:./libs/slf4j-api.jar:./libs/slf4j-log4j12.jar:./libs/spring-ldap.jar:./libs/spring.jar:./libs/swingx.jar:./libs/velocity-tools-generic.jar:./libs/velocity.jar:./libs/xerces.jar:./libs/xml-apis.jar" 
-Djava.library.path="/Users/mvalle/Desktop/OMERO.importer-build1841" 
ome.formats.importer.Main
/Users/mvalle/omero/log
2009-03-10 15:36:22,186 0          [      main] INFO 
ome.system.UpgradeCheck  - no update needed

Warning: class ch.randelshofer.quaqua.filechooser.Files couldn't load library 
libquaqua.jnilib.
User Name: mvalle -- Password: **********
true
Creating root!
Tiff
omero.model.Image:0 == omero.model.ImageI at 15e330,omero.model.Image:0
omero.model.OriginalFile:0 == omero.model.OriginalFileI at f69ed3,omero.model.OriginalFile:0
omero.model.Pixels:0:0 == omero.model.PixelsI at 356db6,Pixels:0
omero.model.Channel:0:0 == omero.model.ChannelI at b5f36e,omero.model.Channel:0:0
omero.model.LogicalChannel:0:0 == 
omero.model.LogicalChannelI at 80ce9c,omero.model.LogicalChannel:0:0

Starting references....
Pixels:0 == omero.model.OriginalFile:0

containerCache contains 5 entries.
referenceCache contains 1 entries.
Saving pixels id: 1

-- 
Ing. Mario Valle
Data Analysis Group                              | http://www.cscs.ch/~mvalle
Swiss National Supercomputing Centre (CSCS)      | Tel:  +41 (91) 610.82.60
v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax:  +41 (91) 610.82.82



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