[ome-users] ome-users Digest, Vol 47, Issue 8 - Importing ANALYZE 7.5 and NIFTI file formats : please give me FTP server details

[Cornelissen, Frans [PRDBE]]

Hi Melissa,

Could you please forward me the details of the FTP server?
Since this is a 3F format, many files  are a lot bigger than 10 MB (= my
limit for email)

Tx,regards, frans

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Message: 1
Date: Mon, 09 Feb 2009 12:23:58 -0600
From: Melissa Linkert <melissa at glencoesoftware.com>
Subject: Re: [ome-users] Importing ANALYZE 7.5 and NIFTI file formats
To: ome-users at lists.openmicroscopy.org.uk
Message-ID: <cc48eb806df8194e636b1ff9d4d4fa51 at zelda>
Content-Type: text/plain; charset="us-ascii"; format="flowed"

Hi Frans,

Thank you for the suggestions.  We do have plans to add support for 
the Analyze 7.5 and NIFTI formats in the 4.1.0 release of Bio-Formats 
- please see 
https://skyking.microscopy.wisc.edu/trac/java/milestone/bio-formats-4.1.
0 
for details.

Our main obstacle in adding support for these formats is a lack of 
sample data.  If you would be willing to share a few files in either 
format, that would help us out a lot.  Files smaller than 15 MB can be 
sent as email attachments; if you have larger files, please let me 
know and I will provide you with our FTP server information.

Regards,
-Melissa
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On 2009-02-09 09:04:39 -0600 "Cornelissen, Frans [PRDBE]" 
<FCORNELI at its.jnj.com> wrote:
> Hi,
> Would it be possible to include ANALYZE 7.5 and NIFTI (=analyze7.5 
> with
> a few extra fields) in the list of supported BIOFORMATS files?
> These are typically 3D or 4D file formats (3 spatial +Time) used in
> biomedical research
> Some references:
> NIFTI description:
> /nifti.nimh.nih.gov/nifti-1
> java code to read NIFTI
> http://niftilib.sourceforge.net/
> Analyze specification:
> Mayo Clinic. ANALYZE 7.5 File Format
> http://www.mayo.edu/bir/PDF/ANALYZE75.pdf
> java code to read both Analyze and NIFTI:
> http://www.loni.ucla.edu/Software/moreinfo.php?package=Debabeler
> thanks, best regards, frans
> _______________________________________________