[ome-users] [ome-devel] Problem with OMERO.importer and XP
Brian Loranger
brian.loranger at lifesci.dundee.ac.uk
Fri Aug 14 17:24:30 BST 2009
Hi Olivier,
For the sake of those of us on both the OME-DEV and OME-USER mailing
lists, I'm going to just use one of them :)
Can you please send me your "importer.log" file (located in your home
directory under OMERO/logs/ folder). Hopefully there's some additional
information in there that can help uncover the mystery.
Thanks,
Brian
On 14 Aug 2009, at 14:25, Olivier Arnaiz wrote:
> Le 14 août 09 à 14:03, Brian Loranger a écrit :
>
>> Hi Olivier,
>>
>> I've not seen this error before and we have several folks here
>> using the importer with the latest version of java. The error
>> suggests it's something in the underlying java native library and
>> I'm wondering if you have a corrupted java install. Try
>> reinstalling it from the Sun Java site and see if that helps.
>
> I did and I have exactly the same error :(
>
> Olivier
>
>
>
>>
>> Cheers,
>>
>> Brian
>>
>> On 14 Aug 2009, at 08:59, Olivier Arnaiz <arnaiz at cgm.cnrs-gif.fr>
>> wrote:
>>
>>> Hello,
>>>
>>> I have this error when I execute OMERO.importer (v4) on a Windows
>>> XP computer.
>>> OMERO.insight works on this machine and all the clients work on a
>>> MacOS X OS.
>>>
>>> Do you have any idea ?
>>>
>>> Thanks
>>> Olivier
>>>
>>> #
>>> # A fatal error has been detected by the Java Runtime Environment:
>>> #
>>> # EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x6d03920c,
>>> pid=1084, tid=3848
>>> #
>>> # JRE version: 6.0_15-b03
>>> # Java VM: Java HotSpot(TM) Client VM (14.1-b02 mixed mode windows-
>>> x86 )
>>> # Problematic frame:
>>> # C [awt.dll+0x3920c]
>>> #
>>> # If you would like to submit a bug report, please visit:
>>> # http://java.sun.com/webapps/bugreport/crash.jsp
>>> # The crash happened outside the Java Virtual Machine in native
>>> code.
>>> # See problematic frame for where to report the bug.
>>> #
>>>
>>> --------------- T H R E A D ---------------
>>>
>>> Current thread (0x4a0e6c00): JavaThread "AWT-Windows" daemon
>>> [_thread_in_native, id=3848, stack(0x4a550000,0x4a750000)]
>>>
>>> siginfo: ExceptionCode=0xc0000005, writing address 0xe137e41c
>>>
>>> Registers:
>>> EAX=0x036a08cc, EBX=0x00000100, ECX=0xe137e41c, EDX=0x00000100
>>> ESP=0x4a74f294, EBP=0xff000000, ESI=0x0000049c, EDI=0x00000000
>>> EIP=0x6d03920c, EFLAGS=0x00010286
>>>
>>> Top of Stack: (sp=0x4a74f294)
>>> 0x4a74f294: 4a74f2f0 00000100 4a74f374 00000100
>>> 0x4a74f2a4: 6d0aac1e 036a08cc e137e41c 00000100
>>> 0x4a74f2b4: 00000100 4a74f4f0 4a74f2f0 00000000
>>> 0x4a74f2c4: 00000000 00000100 4a7aeef0 00000100
>>> 0x4a74f2d4: 4ebff8a0 00000400 e137e41c 00000000
>>> 0x4a74f2e4: 00000000 00000100 00000100 00000000
>>> 0x4a74f2f4: 00000000 00000100 00000100 00000000
>>> 0x4a74f304: 00000000 00000004 00000400 00000000
>>>
>>> Instructions: (pc=0x6d03920c)
>>> 0x6d0391fc: 00 00 00 00 8b 54 24 1c 8b 28 81 cd 00 00 00 ff
>>> 0x6d03920c: 89 29 83 c0 04 83 c1 04 4a 75 ed 03 c6 03 cf 4b
>>>
>>>
>>> Stack: [0x4a550000,0x4a750000], sp=0x4a74f294, free space=2044k
>>> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code,
>>> C=native code)
>>> C [awt.dll+0x3920c]
>>>
>>> [error occurred during error reporting (printing native stack), id
>>> 0xc0000005]
>>>
>>> Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
>>> j sun.awt.windows.WToolkit.eventLoop()V+0
>>> j sun.awt.windows.WToolkit.run()V+69
>>> j java.lang.Thread.run()V+11
>>> v ~StubRoutines::call_stub
>>>
>>> --------------- P R O C E S S ---------------
>>>
>>> Java Threads: ( => current thread )
>>> 0x48e94400 JavaThread "D3D Screen Updater" daemon
>>> [_thread_blocked, id=1464, stack(0x50580000,0x50780000)]
>>> 0x4a033400 JavaThread "Image Fetcher 1" daemon [_thread_blocked,
>>> id=1452, stack(0x50380000,0x50580000)]
>>> 0x4a957400 JavaThread "HSQLDB Timer @1e88b35" daemon
>>> [_thread_blocked, id=1192, stack(0x50180000,0x50380000)]
>>> 0x4a8ba000 JavaThread "Swing-Shell" daemon [_thread_blocked,
>>> id=3940, stack(0x4f660000,0x4f860000)]
>>> 0x4a7e8000 JavaThread "AWT-EventQueue-0" [_thread_in_native,
>>> id=3876, stack(0x4f430000,0x4f630000)]
>>> 0x4a7ef800 JavaThread "Image Fetcher 0" daemon [_thread_blocked,
>>> id=3860, stack(0x4f230000,0x4f430000)]
>>> 0x4a7d7000 JavaThread "Keep-Alive-Timer" daemon
>>> [_thread_blocked, id=3856, stack(0x4f030000,0x4f230000)]
>>> =>0x4a0e6c00 JavaThread "AWT-Windows" daemon [_thread_in_native,
>>> id=3848, stack(0x4a550000,0x4a750000)]
>>> 0x4a0be000 JavaThread "AWT-Shutdown" [_thread_blocked, id=2540,
>>> stack(0x4a350000,0x4a550000)]
>>> 0x4a0c6800 JavaThread "Java2D Disposer" daemon [_thread_blocked,
>>> id=3844, stack(0x4a150000,0x4a350000)]
>>> 0x48e92000 JavaThread "Low Memory Detector" daemon
>>> [_thread_blocked, id=3808, stack(0x49b00000,0x49d00000)]
>>> 0x48e8c400 JavaThread "CompilerThread0" daemon [_thread_blocked,
>>> id=3804, stack(0x49900000,0x49b00000)]
>>> 0x48e8ac00 JavaThread "Attach Listener" daemon [_thread_blocked,
>>> id=3792, stack(0x49700000,0x49900000)]
>>> 0x48e89800 JavaThread "Signal Dispatcher" daemon
>>> [_thread_blocked, id=3788, stack(0x49500000,0x49700000)]
>>> 0x48e79000 JavaThread "Finalizer" daemon [_thread_blocked,
>>> id=3752, stack(0x49300000,0x49500000)]
>>> 0x48e74400 JavaThread "Reference Handler" daemon
>>> [_thread_blocked, id=3756, stack(0x49100000,0x49300000)]
>>> 0x00ca7c00 JavaThread "main" [_thread_blocked, id=3716,
>>> stack(0x00030000,0x00230000)]
>>>
>>> Other Threads:
>>> 0x48e71400 VMThread [stack: 0x48f00000,0x49100000] [id=3760]
>>> 0x48e9c800 WatcherThread [stack: 0x49d00000,0x49f00000] [id=3812]
>>>
>>> VM state:not at safepoint (normal execution)
>>>
>>> VM Mutex/Monitor currently owned by a thread: None
>>>
>>> Heap
>>> def new generation total 9088K, used 7323K [0x03200000,
>>> 0x03bd0000, 0x080c0000)
>>> eden space 8128K, 78% used [0x03200000, 0x03836f30, 0x039f0000)
>>> from space 960K, 100% used [0x03ae0000, 0x03bd0000, 0x03bd0000)
>>> to space 960K, 0% used [0x039f0000, 0x039f0000, 0x03ae0000)
>>> tenured generation total 121024K, used 4368K [0x080c0000,
>>> 0x0f6f0000, 0x43200000)
>>> the space 121024K, 3% used [0x080c0000, 0x08504198,
>>> 0x08504200, 0x0f6f0000)
>>> compacting perm gen total 15616K, used 15615K [0x43200000,
>>> 0x44140000, 0x47200000)
>>> the space 15616K, 99% used [0x43200000, 0x4413fd58,
>>> 0x4413fe00, 0x44140000)
>>> No shared spaces configured.
>>>
>>> Dynamic libraries:
>>> 0x00400000 - 0x00477f9c C:\Documents and Settings\Mr Cohen\Bureau
>>> \OMERO.clients-Beta4.0.3.win\OMERO.clients\OMERO.importer.exe
>>> 0x7c910000 - 0x7c9c9000 C:\WINDOWS\system32\ntdll.dll
>>> 0x7c800000 - 0x7c906000 C:\WINDOWS\system32\kernel32.dll
>>> 0x77da0000 - 0x77e4c000 C:\WINDOWS\system32\ADVAPI32.DLL
>>> 0x77e50000 - 0x77ee2000 C:\WINDOWS\system32\RPCRT4.dll
>>> 0x77fc0000 - 0x77fd1000 C:\WINDOWS\system32\Secur32.dll
>>> 0x77be0000 - 0x77c38000 C:\WINDOWS\system32\msvcrt.dll
>>> 0x7c9d0000 - 0x7d1f5000 C:\WINDOWS\system32\SHELL32.DLL
>>> 0x77ef0000 - 0x77f39000 C:\WINDOWS\system32\GDI32.dll
>>> 0x7e390000 - 0x7e421000 C:\WINDOWS\system32\USER32.dll
>>> 0x77f40000 - 0x77fb6000 C:\WINDOWS\system32\SHLWAPI.dll
>>> 0x76320000 - 0x7633d000 C:\WINDOWS\system32\IMM32.DLL
>>> 0x77390000 - 0x77493000 C:\WINDOWS\WinSxS
>>> \x86_Microsoft.Windows.Common-
>>> Controls_6595b64144ccf1df_6.0.2600.5512_x-ww_35d4ce83\comctl32.dll
>>> 0x58b50000 - 0x58bea000 C:\WINDOWS\system32\comctl32.dll
>>> 0x6d800000 - 0x6da8b000 C:\Program Files\Java\jre6\bin\client
>>> \jvm.dll
>>> 0x76ae0000 - 0x76b0f000 C:\WINDOWS\system32\WINMM.dll
>>> 0x7c340000 - 0x7c396000 C:\WINDOWS\system32\MSVCR71.dll
>>> 0x6d7b0000 - 0x6d7bc000 C:\Program Files\Java\jre6\bin\verify.dll
>>> 0x6d330000 - 0x6d34f000 C:\Program Files\Java\jre6\bin\java.dll
>>> 0x6d290000 - 0x6d298000 C:\Program Files\Java\jre6\bin\hpi.dll
>>> 0x76ba0000 - 0x76bab000 C:\WINDOWS\system32\PSAPI.DLL
>>> 0x6d7f0000 - 0x6d7ff000 C:\Program Files\Java\jre6\bin\zip.dll
>>> 0x6d000000 - 0x6d14a000 C:\Program Files\Java\jre6\bin\awt.dll
>>> 0x72f50000 - 0x72f76000 C:\WINDOWS\system32\WINSPOOL.DRV
>>> 0x774a0000 - 0x775dd000 C:\WINDOWS\system32\ole32.dll
>>> 0x5b090000 - 0x5b0c8000 C:\WINDOWS\system32\uxtheme.dll
>>> 0x74690000 - 0x746dc000 C:\WINDOWS\system32\MSCTF.dll
>>> 0x75140000 - 0x7516e000 C:\WINDOWS\system32\msctfime.ime
>>> 0x6d230000 - 0x6d284000 C:\Program Files\Java\jre6\bin
>>> \fontmanager.dll
>>> 0x4fcf0000 - 0x4fe96000 C:\WINDOWS\system32\d3d9.dll
>>> 0x6de60000 - 0x6de66000 C:\WINDOWS\system32\d3d8thk.dll
>>> 0x77bd0000 - 0x77bd8000 C:\WINDOWS\system32\VERSION.dll
>>> 0x6d610000 - 0x6d623000 C:\Program Files\Java\jre6\bin\net.dll
>>> 0x719f0000 - 0x71a07000 C:\WINDOWS\system32\WS2_32.dll
>>> 0x719e0000 - 0x719e8000 C:\WINDOWS\system32\WS2HELP.dll
>>> 0x6d630000 - 0x6d639000 C:\Program Files\Java\jre6\bin\nio.dll
>>> 0x71990000 - 0x719d0000 C:\WINDOWS\System32\mswsock.dll
>>> 0x76ed0000 - 0x76ef7000 C:\WINDOWS\system32\DNSAPI.dll
>>> 0x76f60000 - 0x76f68000 C:\WINDOWS\System32\winrnr.dll
>>> 0x76f10000 - 0x76f3d000 C:\WINDOWS\system32\WLDAP32.dll
>>> 0x76f70000 - 0x76f76000 C:\WINDOWS\system32\rasadhlp.dll
>>> 0x4edd0000 - 0x4ee29000 C:\WINDOWS\system32\hnetcfg.dll
>>> 0x719d0000 - 0x719d8000 C:\WINDOWS\System32\wshtcpip.dll
>>> 0x778e0000 - 0x779d8000 C:\WINDOWS\system32\SETUPAPI.dll
>>> 0x6fee0000 - 0x6ff35000 C:\WINDOWS\system32\netapi32.dll
>>> 0x77b50000 - 0x77b72000 C:\WINDOWS\system32\appHelp.dll
>>> 0x76f80000 - 0x76fff000 C:\WINDOWS\system32\CLBCATQ.DLL
>>> 0x77000000 - 0x770d4000 C:\WINDOWS\system32\COMRes.dll
>>> 0x770e0000 - 0x7716b000 C:\WINDOWS\system32\OLEAUT32.dll
>>> 0x765b0000 - 0x76606000 C:\WINDOWS\System32\cscui.dll
>>> 0x76590000 - 0x765ad000 C:\WINDOWS\System32\CSCDLL.dll
>>> 0x4fea0000 - 0x5017a000 C:\WINDOWS\system32\xpsp2res.dll
>>> 0x71a60000 - 0x71a72000 C:\WINDOWS\system32\MPR.dll
>>> 0x75ef0000 - 0x75ef7000 C:\WINDOWS\System32\drprov.dll
>>> 0x71b70000 - 0x71b7e000 C:\WINDOWS\System32\ntlanman.dll
>>> 0x71c30000 - 0x71c47000 C:\WINDOWS\System32\NETUI0.dll
>>> 0x71bf0000 - 0x71c30000 C:\WINDOWS\System32\NETUI1.dll
>>> 0x71be0000 - 0x71be7000 C:\WINDOWS\System32\NETRAP.dll
>>> 0x71b50000 - 0x71b63000 C:\WINDOWS\System32\SAMLIB.dll
>>> 0x75f00000 - 0x75f0a000 C:\WINDOWS\System32\davclnt.dll
>>> 0x73cc0000 - 0x73cd3000 C:\WINDOWS\system32\shgina.dll
>>> 0x75900000 - 0x759fa000 C:\WINDOWS\system32\MSGINA.dll
>>> 0x74730000 - 0x7476d000 C:\WINDOWS\system32\ODBC32.dll
>>> 0x76340000 - 0x7638a000 C:\WINDOWS\system32\comdlg32.dll
>>> 0x76960000 - 0x76a16000 C:\WINDOWS\system32\USERENV.dll
>>> 0x762f0000 - 0x76300000 C:\WINDOWS\system32\WINSTA.dll
>>> 0x4fb70000 - 0x4fb88000 C:\WINDOWS\system32\odbcint.dll
>>> 0x76920000 - 0x76928000 C:\WINDOWS\system32\LINKINFO.dll
>>> 0x76930000 - 0x76956000 C:\WINDOWS\system32\ntshrui.dll
>>> 0x76ac0000 - 0x76ad1000 C:\WINDOWS\system32\ATL.DLL
>>>
>>> VM Arguments:
>>> jvm_args: -Xmx1073741824 -Xms134217728
>>> java_command: <unknown>
>>> Launcher Type: generic
>>>
>>> Environment Variables:
>>> PATH=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:
>>> \Program Files\ATI Technologies\ATI Control Panel;C:\Program Files
>>> \Microsoft SQL Server\80\Tools\Binn\
>>> USERNAME=Mr Cohen
>>> OS=Windows_NT
>>> PROCESSOR_IDENTIFIER=x86 Family 15 Model 4 Stepping 3, GenuineIntel
>>>
>>>
>>>
>>> --------------- S Y S T E M ---------------
>>>
>>> OS: Windows XP Build 2600 Service Pack 3
>>>
>>> CPU:total 2 (1 cores per cpu, 2 threads per core) family 15 model
>>> 4 stepping 3, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ht
>>>
>>> Memory: 4k page, physical 1046596k(517848k free), swap
>>> 2518008k(2004584k free)
>>>
>>> vm_info: Java HotSpot(TM) Client VM (14.1-b02) for windows-x86 JRE
>>> (1.6.0_15-b03), built on Jul 25 2009 01:22:46 by "java_re" with MS
>>> VC++ 7.1
>>>
>>> time: Fri Aug 14 09:33:51 2009
>>> elapsed time: 7 seconds
>>>
>>>
>>> --
>>> Olivier Arnaiz
>>> CGM-CNRS
>>> 91198 Gif-sur-Yvette
>>> 01 69 82 43 75
>>>
>>> ParameciumDB:
>>> http://paramecium.cgm.cnrs-gif.fr/
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> ome-devel mailing list
>>> ome-devel at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
> --
> Olivier Arnaiz
> CGM-CNRS
> 91198 Gif-sur-Yvette
> 01 69 82 43 75
>
> ParameciumDB:
> http://paramecium.cgm.cnrs-gif.fr/
>
>
>
>
Brian Loranger
Software Developer, Open Microscopy Environment
Division of Gene Regulation and Expression
University of Dundee
(The University of Dundee is a registered Scottish charity, No:
SC015096)
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