[ome-users] Server hangs (again) after upgrade

[josh.moore at gmx.de]

Mario Valle writes:
 > Thanks a lot Josh!

Glad to help.

 > From the log seems the server is in an infinite loop without any
 > visible error message.  See attached.

The only thing I can see is a background thread which periodically
runs (every 30 seconds) for indexing the database for search. Can you
connect with clients to the server? If so, I'd say your rip-roarin',
and ready to go.

 > BTW, is the database version OMERO3A__11 correct?

Yes.

 > The check on OMERO version seems successful:
 > 2008-11-04 12:01:53,588 INFO  [ome.services.util.ServerVersionCheck] (main) OMERO Version: 
 > 3.0-Beta3 (Rev: 2461) Ready.
 > 
 > Could be a problem related to the posgres version 8.1.4? Should I try to upgrade?

I don't believe so. The only issue we've run into so far with Postgres
8.1 is the more limited PLPSQL language for upgrade scripts.

Cheers,
~Josh.


 > Thanks for your help!
 > 				mario
 > 
 > josh.moore at gmx.de wrote:
 > > Hi Mario,
 > > 
 > > The server is not hanging, but rather non-WARNING log output is being
 > > sent to:
 > > 
 > >   jboss-4.2.3.GA/server/default/log/server.log
 > > 
 > > Can you check that that file has the output you were expecting? Or
 > > were you also having issues connecting to the server?
 > > 
 > > ~J.
 > > 
 > > Mario Valle writes:
 > >  > 1) Upgraded to 3.1.1 (I have PostgreSQL 8.1.4 on MacOSX 10.4)
 > >  > 2) Upgraded the database with the corrected OMERO3A__5.sql file. No error, everything 
 > >  > committed at the end.
 > >  > 3) Started the server, but it hangs with the message:
 > >  > 
 > >  > 10:42:52,303 INFO  [Log4jService$URLWatchTimerTask] Configuring from URL: 
 > >  > resource:jboss-log4j.xml
 > >  > 
 > >  > 4) OK, deleted database, recreated it from scratch
 > >  > 5) There is an error in the java omero setup-db deploy phase:
 > >  > Could not load definitions from resource emma_ant.properties. It could not be found.
 > >  > But the phase finish with a "BUILD SUCCESSFUL" message.
 > >  > 6) Started the server, hang exactly at the same step:
 > >  > 12:00:12,934 INFO  [Log4jService$URLWatchTimerTask] Configuring from URL: 
 > >  > resource:jboss-log4j.xml
 > >  > 
 > >  > What can I check to troubleshot this problem and continue?
 > >  > Desperate
 > >  > 		mario
 > > 
 > 
 > -- 
 > Ing. Mario Valle
 > Data Analysis Group                              | http://www.cscs.ch/~mvalle
 > Swiss National Supercomputing Centre (CSCS)      | Tel:  +41 (91) 610.82.60
 > v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax:  +41 (91) 610.82.82