[ome-users] Cannot see images (big damage recovered...)

Mario Valle mvalle at cscs.ch
Mon Nov 26 17:32:30 GMT 2007


Ta da!
There are two enties for image_server_url!

ome=# select image_server_url from repositories;
          image_server_url
------------------------------------
 http://horus.cscs.ch/cgi-bin/omeis
 http://horus17/cgi-bin/omeis
(2 rows)

I cannot delete the 2nd line nor change it to have the same value as the first one.
So I simply updated it to an alias of the host name.

Ugly, but works.

Thanks to all!
			mario

Curtis Rueden wrote:
> Hi Mario,
> 
>> Why the omeis_url changed with ome admin configuration is not updated?
>> Beside restarting apache and postgtes, what else should I do to make the change active?
> 
> I do not know too much about this, but you can check whether the
> changes took effect in your DB:
> 
> % psql ome
> 
> ome=# select image_server_url from repositories;
>                  image_server_url
> --------------------------------------------------
>  http://skyking.microscopy.wisc.edu/cgi-bin/omeis
> (1 row)
> 
> ome=# select value from configuration where name='lsid_authority';
>             value
> -----------------------------
>  skyking.microscopy.wisc.edu
> (1 row)
> 
> -Curtis
> 
> On Nov 26, 2007 7:42 AM, Mario Valle <mvalle at cscs.ch> wrote:
>> Thanks Markus in pointing me in the right direction!
>> I have added a line to my workstation /etc/hosts file
>> xx.xx.xx.xx horus17
>> and now I see my images inside OME!
>>
>> Well, it is a temporary workaround.
>> so the real question now is:
>>
>> Why the omeis_url changed with ome admin configuration is not updated?
>> Beside restarting apache and postgtes, what else should I do to make the change active?
>> Thanks!
>>                 mario
>>
>> Markus Dorn wrote:
>>> Hi Mario,
>>>
>>> maybe you need an alias for horus <-> horus17 in /etc/hosts? Maybe have
>>> a look into the generated html page in the browser to see where ome is
>>> looking for the pictures (left click in browser-show source and
>>> search for an img tag). In our version it looks like that:  <img
>>> src="http://ome.kip.uni-heidelberg.de/cgi-bin/omeis?Method=GetThumb&PixelsID=12"
>>> Usemap="#Image12">
>>>
>>> Hope this points you maybe in the right direction :-)
>>>
>>> Markus
>>>
>>> Mario Valle <mvalle at cscs.ch> wrote:
>>>
>>>> The big damage has been recovered restoring the file /etc/ome-install.store
>>>> Now I'm back to square one.
>>>> 1) Postgres is running
>>>> postgres  6228     1  0 11:26 pts/6    00:00:00 /usr/bin/postmaster -h horus17 -p 5432 -D
>>>> /var/lib/pgsql/data
>>>> postgres  6230  6228  0 11:26 pts/6    00:00:00 postgres: stats buffer process
>>>> postgres  6231  6230  0 11:26 pts/6    00:00:00 postgres: stats collector process
>>>> postgres  8289  6228  0 11:28 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres  8308  6228  0 11:28 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres  8645  6228  0 11:28 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres  9058  6228  0 11:29 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres  9131  6228  0 11:29 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres  9728  6228  0 11:29 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres 14503  6228  0 11:33 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> postgres 14566  6228  0 11:33 pts/6    00:00:00 postgres: apache ome [local] idle
>>>> 2) $ hostname
>>>> horus17
>>>> but from outside this machine is reachable as horus.cscs.ch
>>>> 3) I changed omeis_url to
>>>> http://horus.cscs.ch/cgi-bin/omeis (from http://horus17/cgi-bin/omeis). Restarted Apache.
>>>> No way.
>>>> 4) Changed lsid_url to horus.cscs.ch (from horus17). Restarted Apache. No images at all!
>>>> What else should I set to at last access the images!
>>>> Thanks for the help!
>>>>                              mario
>>>
>>>> Markus Dorn wrote:
>>>>> Hi Mario,
>>>>>
>>>>> postgres db is running? Try `ps -ef | grep post`, was tells `hostname`?
>>>>>
>>>>> If not and you dont have data in ome I would success to reinstall.
>>>>>
>>>>> Markus
>>>>>
>>>>>> Now the web server does not restarts (cannot access database at
>>>>>> horus.cscs.ch) and cannot execute ome admin configure to reset the
>>>>>> changed values.
>>>>>> What can I do to have back my OME server and to have a working image
>>>>>> viewer?
>>>> _______________________________________________
>>>> ome-users mailing list
>>>> ome-users at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>
>>>
>> --
>> Ing. Mario Valle
>> Visualization Group                              | http://www.cscs.ch/~mvalle
>> Swiss National Supercomputing Centre (CSCS)      | Tel:  +41 (91) 610.82.60
>> v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax:  +41 (91) 610.82.82
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
> 

-- 
Ing. Mario Valle
Visualization Group                              | http://www.cscs.ch/~mvalle
Swiss National Supercomputing Centre (CSCS)      | Tel:  +41 (91) 610.82.60
v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax:  +41 (91) 610.82.82



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