[ome-users] Problem with ome command-line administration: annotate spreadsheet

[Tom Macura]

Hi Bryson,

Thanks for your email. We're working on OME 2.6.1 which should be  
released soon. A release candidate might even be available next week.

You've found a bug that was fixed and committed to CVS. You can wait  
for 2.6.1 or, in the interim, replace
	src/perl2/OME/Util/Annotate.pm with the attached Annotate.pm and  
reinstall.

That should fix the missing noop functionality and the perl warnings.  
The fixed OME responds like this:

[macurato at lgopt4 ~]$ ome annotate spreadsheet help
Specify the input filename with the -f flag

To see documentation you need to put the help parameter up front.  
Like this:
	ome help annotate spreadsheet

You also wrote, "Also, all of these annotations are wrong, because  
the Categories are made under the wrong Category Groups". If you  
suspect an OME please provide more details and I'll take a look.

I'm very sorry I didn't respond to your email of July 18th -- I'm  
looking at it now.

Best,

Tom
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Annotate.pm
Type: text/x-perl-script
Size: 4036 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20070808/621abcd3/attachment.bin>