[ome-users] install from cvs (8-18-06)
Josiah Johnston
siah at nih.gov
Mon Aug 21 19:15:00 BST 2006
Is your installation root /home/bernd/allOMEs/newOME/OME/ or /home/
bernd/allOMEs/06_08_18/OME ?
From your installation root, can you type:
cvs status src/perl2/OME/Install/CoreDatabaseTablesTask.pm
Also, can you type
ls -ld /home/bernd/allOMEs/newOME/OME/src/html/Templates/System/
Display/Many//generic_ref_minimalList.tmpl /home/bernd/allOMEs/newOME/
OME/src/html/Templates /home/bernd/allOMEs/newOME /home/bernd/allOMEs
Thanks,
Josiah
On Aug 21, 2006, at 11:03 AM, Bernd Jagla wrote:
>
> I guess I should have tried it out first and not think first....
>
> When trying to log in I get now the following error message:
>
> Error serving OME::Web::Home: HTML::Template->new() : Cannot open
> included
> file
> /home/bernd/allOMEs/newOME/OME/src/html/Templates/System/Display/
> Many//gener
> ic_ref_minimalList.tmpl : file not found. at
> /usr/lib/perl5/site_perl/5.8.6/HTML/Template.pm line 1632
> HTML::Template::_init_template('HTML::Template=HASH(0xa81d81c)')
> called at /usr/lib/perl5/site_perl/5.8.6/HTML/Template.pm line 1205
> HTML::Template::_init('HTML::Template=HASH(0xa81d81c)') called at
> /usr/lib/perl5/site_perl/5.8.6/HTML/Template.pm line 1099
> HTML::Template::new('HTML::Template', 'filename',
> '/home/bernd/allOMEs/newOME/OME/src/html/Templates/System/Disp...',
> 'path',
> '/home/bernd/allOMEs/newOME/OME/src/html/Templates/System/Disp...',
> 'case_sensitive', 1) called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/
> TemplateManager.pm line
> 367
>
> OME::Web::TemplateManager::getRenderingTemplate
> ('OME::Web::TemplateManager',
> 'undef', 'ref_minimalList', 'many') called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/DBObjRender.pm
> line 365
>
> OME::Web::DBObjRender::renderArray('OME::Web::DBObjRender=HASH
> (0xa83e178)',
> 'ARRAY(0xa841258)', 'ref_minimalList', 'HASH(0xa81f21c)') called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/Home.pm line 130
>
> OME::Web::Home::__getQuickViewProjectData('OME::Web::Home=HASH
> (0xa80b95c)',
> 'undef') called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/Home.pm line 235
> OME::Web::Home::getPageBody('OME::Web::Home=HASH(0xa80b95c)',
> 'HTML::Template=HASH(0xa4e15b4)') called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web.pm line 557
> OME::Web::createOMEPage('OME::Web::Home=HASH(0xa80b95c)',
> 'HTML::Template=HASH(0xa4e15b4)') called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web.pm line 404
> OME::Web::serve('OME::Web::Home=HASH(0xa80b95c)') called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/serve.pl line 88
> eval {...} called at
> /home/bernd/allOMEs/06_08_18/OME/src/perl2/serve.pl line 76
>
> ModPerl::ROOT::ModPerl::Registry::home_bernd_allOMEs_06_08_18_OME_src_
> perl2_
> serve_2epl::handler('Apache2::RequestRec=SCALAR(0xa788064)') called at
> /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/
> RegistryCoo
> ker.pm line 203
> eval {...} called at
> /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/
> RegistryCoo
> ker.pm line 203
> ModPerl::RegistryCooker::run('ModPerl::Registry=HASH(0xa7aa950)')
> called at
> /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/
> RegistryCoo
> ker.pm line 169
>
> ModPerl::RegistryCooker::default_handler('ModPerl::Registry=HASH
> (0xa7aa950)'
> ) called at
> /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/
> Registry.pm
> line 30
> ModPerl::Registry::handler('ModPerl::Registry',
> 'Apache2::RequestRec=SCALAR(0xa788064)') called at -e line 0
> eval {...} called at -e line 0
>
>
> I guess this is related to the Apache problem I was reporting on
> earlier.
> I also attached the Apachelog, but couldn't find anything in there...
>
> Bernd
>
>
> |-----Original Message-----
> |From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-
> users-
> |bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
> |Sent: Monday, August 21, 2006 11:00 AM
> |To: 'OME users'
> |Subject: Re: [ome-users] install from cvs (8-18-06)
> |
> |I did a cvs update, and I got it installed.
> |
> |During installation I got an error message about a concatenation
> that did
> |not create a problem, but I wanted to make you aware of it. See
> attached
> |log
> |file for more information...
> |
> |Also, I was surprised to see that the Apache config knew my old
> Template
> |directory and was skipping some templates there. Is this the correct
> |behavior? Unfortunately I cannot find the message because it was
> already
> |overwritten on my terminal and there is no sign of it in the
> Apache Log...
> |
> |Thanks for the help,
> |
> |Best,
> |
> |Bernd
> |
> ||-----Original Message-----
> ||From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-
> users-
> ||bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
> ||Sent: Friday, August 18, 2006 11:20 AM
> ||To: 'OME users'
> ||Subject: [ome-users] install from cvs (8-18-06)
> ||
> ||I was just trying to do a completely new CVS install (since I
> found some
> ||time to play with the new version.)
> ||
> ||And pretty close to end I got the following error:
> ||
> ||
> ||
> ||
> ||
> ||Initial user creation
> ||
> ||-----------------------
> ||
> ||
> ||
> ||This user will be yourself or the person who will administer the OME
> ||
> ||environment after installation. It is internal to OME. You will
> use this
> ||
> ||username and password to use OME and add new OME users and
> groups. The
> ||
> ||default data directory option is the path on this machine which
> contains
> ||
> ||(or will contain) the proprietary image files (greyscale TIFF's for
> ||
> ||example) you wish to import into OME. An example default data
> directory
> ||
> ||would be "/home/joe/my_ome_images".
> ||
> ||
> ||
> || First name: Bernd
> ||
> || Last name: Jagla
> ||
> || Username: bernd
> ||
> || E-mail address: baj2107 at columbia.edu
> ||
> ||Default data directory: /home/bernd
> ||
> ||
> ||
> ||Are these values correct ? [y/n]:
> ||
> ||Odd number of elements in anonymous hash at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/
> CoreDatabaseTablesT
> |a
> ||sk.pm line 553.
> ||
> ||
> ||
> ||
> ||
> ||Errors executing task: Column 066e4a292457a2ad4e6bdeefcb6e9e58
> does not
> ||exist at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/
> DBObject.pm line
> ||3150
> ||
> || OME::DBObject::__makeInsertSQLs('OME::UserState',
> ||'DBI::db=HASH(0xa3c6224)', 'HASH(0xa3d00b4)') called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/DBObject.pm line 3337
> ||
> || OME::DBObject::__createNewInstance('OME::UserState',
> ||'DBI::db=HASH(0xa3c6224)', 'HASH(0xa3d00b4)') called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Factory.pm line 856
> ||
> || eval {...} called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Factory.pm line 855
> ||
> || OME::Factory::newObject('OME::Factory=HASH(0xa301f68)',
> ||'OME::UserState', 'HASH(0xa3d00b4)') called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/
> CoreDatabaseTablesT
> |a
> ||sk.pm line 553
> ||
> ||
> ||OME::Install::CoreDatabaseTablesTask::create_experimenter
> ('OME::SessionMan
> |a
> ||ger=HASH(0xa302e90)') called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/
> CoreDatabaseTablesT
> |a
> ||sk.pm line 1457
> ||
> || OME::Install::CoreDatabaseTablesTask::execute() called at
> (eval
> |220)
> ||line 1
> ||
> || eval 'OME::Install::CoreDatabaseTablesTask::execute()
> ||
> ||;' called at install.pl line 80
> ||
> || main::run_tasks() called at install.pl line 265
> ||
> || at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Factory.pm
> line 858
> ||
> || OME::Factory::newObject('OME::Factory=HASH(0xa301f68)',
> ||'OME::UserState', 'HASH(0xa3d00b4)') called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/
> CoreDatabaseTablesT
> |a
> ||sk.pm line 553
> ||
> ||
> ||OME::Install::CoreDatabaseTablesTask::create_experimenter
> ('OME::SessionMan
> |a
> ||ger=HASH(0xa302e90)') called at
> ||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/
> CoreDatabaseTablesT
> |a
> ||sk.pm line 1457
> ||
> || OME::Install::CoreDatabaseTablesTask::execute() called at
> (eval
> |220)
> ||line 1
> ||
> || eval 'OME::Install::CoreDatabaseTablesTask::execute()
> ||
> ||;' called at install.pl line 80
> ||
> || main::run_tasks() called at install.pl line 265
> ||
> ||
> ||
> || at install.pl line 81
> ||
> || main::run_tasks() called at install.pl line 265
> ||
> ||# Looks like your test died before it could output anything.
> ||
> ||
> ||
> ||
> ||
> ||Does this mean anything to anyone?
> ||
> ||
> ||
> ||Thanks,
> ||
> ||
> ||
> ||Bernd
>
> <ApacheConfigTask.log>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
More information about the ome-users
mailing list