[ome-users] create category

[Ilya Goldberg]

Hi Bernd
The importer style looks like it will be similar to 
src/perl2/OME/ImportEngine/MetamorphHTDFormat.pm, so this would 
probably be the most useful example.
This format also has a run-file describing a bunch of images from a 
plate(s), though the format of the images in this case is TIFF.
BMPreader.pm in the same directory is an importer for a non-tiff format 
used by the Beckman IC100 - another high-content screening instrument 
for 384-well plates.

Hopefully these will be useful.  Please don't hesitate to ask 
questions.  That's why we're here.
-Ilya


On Jul 20, 2005, at 11:38 AM, Bernd Jagla wrote:

> Jason, Chris,
>
> I switched to the CVS because I had problems with the matlab 
> installation.
> Matlab seems to be working now. I can the results of the module 
> executions
> and chain executions. So I am happy about this ;-)
>
> Right now, for the matlab is more important than the other stuff. I 
> will be
> working on an importer for run-files from the INCell Analyzer 3000 
> from GE.
> I have to solve some licensing issues, but I guess I can contribute 
> this to
> OME once I have solved these issues.
>
> The GE system is a bit special, compared to just importing regular 
> tiff,
> since the images are compressed with a proprietary algorithm and also
> encoded with a proprietary algorithm as well. Then the run file (also 
> binary
> and proprietary) holds all the information on the actual scan. Meaning 
> it
> might take a few days (weeks), also because this is not the only 
> project I
> am working on.
>
> I am relying on you guys to help me out if I run into any major/minor
> problem. So, sorry for any dumb questions already...
>
> Regards,
>
> Bernd
>
> |-----Original Message-----
> |From: Jason Swedlow [mailto:jason at lifesci.dundee.ac.uk]
> |Sent: Tuesday, July 19, 2005 11:31 AM
> |To: Chris Allan
> |Cc: Bernd Jagla; ome-users at lists.openmicroscopy.org.uk
> |Subject: Re: [ome-users] create category
> |
> |Bernd et al-
> |
> |Have just been demoing OME CVS system, with me running on OSX Firefox
> |and remote site on XP IE.  There are many Javascript errors, giving
> |blank pages, errors, etc.  i couldn't log because this was at a
> |remote site.  i will try to reporduce and log.  Bernd, is there any
> |reason you need to use CVS.  That is living dangerously...
> |
> |Cheers,
> |
> |Jason
> |
> |On 19 Jul 2005, at 11:10, Chris Allan wrote:
> |
> |> Oh, hehe.
> |>
> |> That's a the contents of a JavaScript error dialog that he's got
> |> popping
> |> up in Internet Explorer Ilya.
> |>
> |> Is this CVS code Bernd? 2.4.0?
> |>
> |> Ciao.
> |>
> |> -Chris
> |>
> |> On Tue, Jul 19, 2005 at 09:43:44AM -0400, Bernd Jagla wrote:
> |>
> |>> SORRY!!!!
> |>>
> |>> I guess there is a misunderstanding: I thought it was obvious and
> |>> not really
> |>> relevant
> |>> I wrote:
> |>> URL: ./server.pl?Page=OME::Web::DBObjDetail&ID=6&Type=OME::Dataset.
> |>> What should have been:
> |>> URL:
> |>> http://156.145.195.172/perl2/serve.pl?
> |>> Page=OME::Web::DBObjDetail&ID=6&Type=O
> |>> ME::Dataset
> |>>
> |>> I apologize for that confusion, but I can't copy the error message
> |>> from the
> |>> Explorer error window.
> |>>
> |>> When importing the images from http://www.openmicroscopy.org/
> |>> TestImages/
> |>> The "executing 'Plane statistics (image server)'" is started
> |>> And at the end I get Importing images, FINISHED, Imported 26
> |>> images from 28
> |>> files. 53 scanned. 0 unknown formats, 9 duplicates, 0 errors.
> |>> 56; 56 ; the date, etc
> |>> (obliviously I tried to import some of the images before)
> |>>
> |>> And I still get the same error message.
> |>>
> |>> Can I give you any more information?
> |>>
> |>> Thanks again,
> |>>
> |>> Regards,
> |>>
> |>> Bernd
> |>>
> |
> |
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