[ome-users] writing xml chain files for matlab scripts

[T. J. Macura]

Anh,

> There is an ome_pixelsTest.m file in the test folder and I was
> wondering if you have a definition file(.ome) so that we can import
> the matlab ome_pixelsTest.m file as a module.
No ome_pixelsTest.m is a very old file. It probably should be 
deprecated.

> I guess what I wanted is an example file that handles the
> input image from the dataset and output it accordingly.
I wrote an example XML file for you today. It is based on the Matlab 
function histeq so it doesn't include a .m file.

The Analysis Module:
	HistogramEqualization.ome
The Analysis Chain:
	HistogramEqualization.ome

Import the files in this order. The first three are required:

src/xml/OME/Analysis/Core/PixelIndicies.ome
src/xml/OME/Analysis/Core/PixelSlices.ome
src/xml/OME/Analysis/Core/PixelSliceModules.ome
src/xml/OME/Analysis/Filters/HistogramEqualization.ome
src/xml/OME/Tests/HistogramEqualization.ome

Write if you have questions.

Tom

On Aug 8, 2005, at 9:32 PM, Anh Vu wrote:

> There is an ome_pixelsTest.m file in the test folder and I was
> wondering if you have a definition file(.ome) so that we can import
> the matlab ome_pixelsTest.m file as a module. I guess what I wanted is
> an example file that handles the input image from the dataset and
> output it accordingly. The matlab input and output test files don't
> seem to describe how matlab and it def file would handle the inputed
> image from the dataset we run against.
>
> Thanks!
> Anh
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
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