[ome-users] Makefile out-of-date with respect to Makefile.PL

Anh Vu anh.q.vu at gmail.com
Mon Aug 8 05:54:19 BST 2005


The command I entered is.
INSERT INTO configuration (name,value)
VALUES('matlab_exec','/usr/local/bin/matlab');

The error I get is a little different from the previous one once I ran
the "Matlab Test Chain' execution chain for the datase.

couldn't retrieve matlab exec path from configuration at
/usr/lib/perl5/site_perl/5.8.3/OME/Analysis/Engine/UnthreadedPerlExecutor.pm
line 80

I also tried select * from configuration; to confirm that the values
are inserted and they are.

P.S. I think OME has a lot of potential and uses, so I'm glad to help
out in anyway I can.
 
Anh

On 8/5/05, T. J. Macura <tm289 at cam.ac.uk> wrote:
> Anh,
> 
> Thanks. This behaviour is not normal and exposes a bug based on an
> update from 2.4.0:
> http://bugs.openmicroscopy.org.uk/show_bug.cgi?id=554
> 
> In the meantime, please type the following SQL command after psql ome
> (assuming /usr/bin/matlab is correct path to your MATLAB executable):
> INSERT INTO configuration (name, value) VALUES ('matlab_exec',
> '/usr/bin/matlab');
> 
> Don't hesitate to write if things don't work as expected for you.
> 
> Tom
> 
> On Aug 5, 2005, at 6:12 PM, Anh Vu wrote:
> 
> > Can't locate object method "matlab_exec" via package
> > "OME::Configuration" at
> > /usr/lib/perl5/site_perl/5.8.3/OME/Analysis/Handlers/MatlabHandler.pm
> > line 1064.
> >
> > is what I get for one of the images inside a dataset when I run the
> > "Matlab Test Chain" from Execute Analysis Chain. Is this normal for
> > the current CVS version? BTW, I imported the Matlab Test Chain using
> > $ome import MatlabTestChain.ome         from ~/OME/src/xml/OME/Tests
> >
> > Anh
> 
>



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