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Hi,
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<div class="">The exception you are seeing seems to be caused by the parsing of the metadata key '<font color="#3933ff" face="Monaco" class=""><span style="font-size: 11px;" class="">xyz-Table Z Resolution’</span></font>. Are there any any unusual values,
characters or empty fields for this value?</div>
<div class="">If you have a sample file you can upload to <a href="https://www.openmicroscopy.org/qa2/qa/upload/" class="">https://www.openmicroscopy.org/qa2/qa/upload/</a> then we can test the issue further.</div>
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<div class="">With Thanks,</div>
<div class="">David Gault</div>
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<blockquote type="cite" class="">
<div class="">On 7 Feb 2019, at 15:16, Biofysikos Biologos <<a href="mailto:biofysikos@gmail.com" class="">biofysikos@gmail.com</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">Hello,<br class="">
<br class="">
I have downloaded the latest bioformats MATLAB package and I would<br class="">
like to use it to read the metadata from an .msr<br class="">
(<a href="https://docs.openmicroscopy.org/bio-formats/5.8.2/formats/lavision-imspector.html" class="">https://docs.openmicroscopy.org/bio-formats/5.8.2/formats/lavision-imspector.html</a>)<br class="">
<br class="">
When I try it in MATLAB I get the following error:<br class="">
<br class="">
Error using bfGetReader (line 85)<br class="">
Java exception occurred:<br class="">
java.lang.NullPointerException<br class="">
<br class="">
at loci.formats.in.ImspectorReader.initFile(ImspectorReader.java:417)<br class="">
<br class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<br class="">
<br class="">
at loci.formats.ImageReader.setId(ImageReader.java:842)<br class="">
<br class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)<br class="">
<br class="">
at loci.formats.ChannelFiller.setId(ChannelFiller.java:223)<br class="">
<br class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)<br class="">
<br class="">
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:291)<br class="">
<br class="">
<br class="">
Error in bfopen (line 114)<br class="">
r = bfGetReader(id, stitchFiles);<br class="">
<br class="">
Would the developers be interested in having more .msr files in order<br class="">
to improve the bfread function?<br class="">
<br class="">
Thank you<br class="">
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http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel<br class="">
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</blockquote>
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<br>
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