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<p class="MsoNormal">Excellent, thanks Ian !<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">ome-devel <ome-devel-bounces@lists.openmicroscopy.org.uk> on behalf of "Munro, Ian" <i.munro@imperial.ac.uk><br>
<b>Reply-To: </b>OME External Developer List <ome-devel@lists.openmicroscopy.org.uk><br>
<b>Date: </b>Tuesday, 17 July 2018 at 13:20<br>
<b>To: </b>OME External Developer List <ome-devel@lists.openmicroscopy.org.uk><br>
<b>Subject: </b>Re: [ome-devel] OME.tiff with FLIM time gates that are not equally spaced in time<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi Romain<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Attached is a little Matlab script to create a FLIM OME-TIFF.<o:p></o:p></p>
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<p class="MsoNormal">The first section just creates some dummy data.<o:p></o:p></p>
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<p class="MsoNormal">The second part (after the tic at line 28) uses the bio-formats Matlab plugin to write this to a file.<o:p></o:p></p>
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<p class="MsoNormal">Note that the variable “delays’ can contain any strings not just the regularly spaced ones used here.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">This is quite old code now so maybe someone from the core OME team could have a quick look and see if it’s still ok?<o:p></o:p></p>
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<p class="MsoNormal">In particular this line:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:Menlo;color:black">java.lang.System.setProperty(</span><span style="font-size:8.5pt;font-family:Menlo;color:#272AD8">'javax.xml.transform.TransformerFactory'</span><span style="font-size:10.0pt;font-family:Menlo;color:black">,
</span><span style="font-size:8.5pt;font-family:Menlo;color:#272AD8">'com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl’</span><span style="font-size:10.0pt;font-family:Menlo;color:black">);</span><span style="font-size:8.5pt;font-family:Menlo;color:#272AD8"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:8.5pt;font-family:Menlo;color:#272AD8"><o:p> </o:p></span></p>
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<p class="MsoNormal">may no longer be required.<o:p></o:p></p>
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<p class="MsoNormal">Also we used to have problems when overwriting existing files. If this has since been addressed,<o:p></o:p></p>
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<p class="MsoNormal">then this section:<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:Menlo"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:8.5pt;font-family:Menlo;color:#BB2CA2">if</span><span style="font-family:Menlo"> exist(outputPath,
</span><span style="font-size:8.5pt;font-family:Menlo;color:#272AD8">'file'</span><span style="font-family:Menlo">) ==
</span><span style="font-size:8.5pt;font-family:Menlo;color:#272AD8">2</span><span style="font-family:Menlo"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:Menlo"> delete(outputPath);<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:Menlo">end<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:Menlo"><o:p> </o:p></span></p>
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<p class="MsoNormal">May no longer be required.<o:p></o:p></p>
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<p class="MsoNormal">Hope that helps.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Best wishes.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Ian<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:Menlo"><o:p> </o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><br>
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<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On 17 Jul 2018, at 12:38, Laine, Romain <<a href="mailto:r.laine@ucl.ac.uk">r.laine@ucl.ac.uk</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi Ian,<o:p></o:p></p>
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<p class="MsoNormal">Many thanks.<o:p></o:p></p>
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<p class="MsoNormal">Code example would be great, please !<o:p></o:p></p>
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<p class="MsoNormal">I am currently using MATLAB, is this a limitation?<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Cheers,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Romain<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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