<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Jason and Steve<div class=""><br class=""></div><div class="">I am trawling through old emails trying to work out where to post the OMERO FIGURE requests, now we have Zegami working reasonably well from Figure through an important script (but still needs work on the metadata and important more data). </div><div class=""><br class=""></div><div class=""><b class="">Jason </b>- I cannot find your description for the life of me of where best to post my suggestions. Was it best on the mailing list?</div><div class=""><br class=""></div><div class=""><b class="">Steve and Jason - I found an old reply from Jason in February that was not followed up. </b></div><div class="">I wonder whether it would be possible to write a grant to work on developing ML capabilities for Zegami (open source python plugins) and OMERO working together with OMERO FIGURE and or IDR?</div><div class="">Not sure who to. Perhaps MRC MCMB (molecular cellular medicine board). </div><div class=""><br class=""></div><div class="">Regards</div><div class="">Ilan</div><div class=""><br class=""></div><div class=""><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Hi Ilan</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Thanks for your comments. Lots to think about, as always.</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Regarding the workflow your lab is using-- it would be great if you or someone from the lab would share it here, or maybe even on the OME blog. If by workflow you mean a real script, is it anywhere at<a href="https://github.com/MicronOxford" class="OWAAutoLink" id="LPlnk820134" previewremoved="true">https://github.com/MicronOxford</a>? Could it be? We've so far failed to get funding for OMERO.figure and cool use cases we haven't thought of would help. It would be great to see what you are doing, understand your workflow, and get ideas how we might improve things-- the spirit and practice of open source, and so on...</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">More to the point-- I definitely should have mentioned OMERO.figure. I was remiss (I plead fatigue and jetlag-- too many meetings in too many timezones). I should have pointed out that all the imaging figures in the Schleicher et al paper were made in OMERO.figure and all of them them are available in the public resource-- go to <a href="http://dx.doi.org/10.17867/10000109" class="OWAAutoLink" id="LPlnk152923" previewremoved="true">http://dx.doi.org/10.17867/10000109</a>, click on the "Figure" tab, Open File, and under owner select Katharina Schleicher. Not a perfect workflow yet, but getting there. It's critically important that we get your (and others) ideas and use cases for this. So far, the funding panels have not been convinced by OMERO.figure-- we need your help to convince them!</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">There is nothing to stop a journal including a link to an OMERO resource (e.g., <a href="https://omero.lifesci.dundee.ac.uk/figure/file/364219" class="OWAAutoLink" id="LPlnk516260" previewremoved="true">https://omero.lifesci.dundee.ac.uk/figure/file/364219</a>) in a paper. They just need to do it! Maybe help us convince the journals that this would be a useful idea to consider??</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Integrating OMERO.figure into IDR? Interesting suggestion-- we should look at the workflow and presentation carefully. As is often the case, it's less about the technical capability and more about the ease and accessibility of the tool and workflow. </div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Thanks again for your thoughts! Keep them coming!</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Cheers,</div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols; font-size: 16px;" class="">Jason<br class=""></div></div><div class=""><br class=""></div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="orphans: 2; widows: 2;" class=""><div style="font-size: 12px;" class=""><div style="font-size: 18px;" class=""><div style="font-size: 12px;" class=""><span class="Apple-style-span" style="font-size: 18px; border-collapse: separate; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; line-height: normal; border-spacing: 0px;"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><div style="font-size: 12px;" class="">____________________________________________________________________________</div><div style="font-size: 12px;" class=""><b class="">Prof. Ilan Davis <a href="mailto:ilan.davis@bioch.ox.ac.uk" class="">ilan.davis@bioch.ox.ac.uk</a> <a href="http://www.ilandavis.com" class="">http://www.ilandavis.com</a></b></div><div class=""><span style="font-size: 12px;" class=""><b class=""><a href="https://twitter.com/ilandavis" class="">https://twitter.com/ilandavis</a></b></span></div><div style="font-size: 12px;" class="">Department of Biochemistry, The University of Oxford, South Parks Road, OXFORD OX1 3QU, UK</div><div style="font-size: 12px;" class="">Direct Office No: (44) (0)1865 613265 Office Fax: (44) (0)1865 613340</div><div style="font-size: 12px;" class="">Lab manager: Dr Darragh Ennis <a href="mailto:darragh.ennis@bioch.ox.ac.uk" class="">darragh.ennis@bioch.ox.ac.uk</a> (44) (0)1865 613271 / 613272 </div><div class=""><span style="font-size: 12px;" class="">PA: </span><span style="text-align: -webkit-auto;" class=""><span style="font-size: 12px;" class=""><a href="mailto:jolanta.parkinson@bioch.ox.ac.uk" class="">jolanta.parkinson@bioch.ox.ac.uk</a> (44) (0)1865 </span></span><span style="text-align: -webkit-auto; font-size: 12px;" class="">613218</span><span style="text-align: -webkit-auto; font-size: 12px;" class=""> </span></div><div style="font-size: 12px;" class="">____________________________________________________________________________</div></div><div style="font-size: 12px;" class=""><br class=""></div></div></span><br class="Apple-interchange-newline" style="font-size: 18px;"></div></div></div></div></div></div></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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<br class=""><div><blockquote type="cite" class=""><div class="">On 1 Feb 2018, at 09:23, Jason Swedlow (Staff) <<a href="mailto:j.r.swedlow@dundee.ac.uk" class="">j.r.swedlow@dundee.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div id="divtagdefaultwrapper" dir="ltr" style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; font-size: 12pt; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols;" class=""><div id="divtagdefaultwrapper" dir="ltr" style="font-size: 12pt; font-family: Tahoma, Geneva, sans-serif, EmojiFont, 'Apple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'Android Emoji', EmojiSymbols;" class=""><div style="margin-top: 0px; margin-bottom: 0px;" class="">Hi Ilan</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Thanks for your comments. Lots to think about, as always.</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Regarding the workflow your lab is using-- it would be great if you or someone from the lab would share it here, or maybe even on the OME blog. If by workflow you mean a real script, is it anywhere at<a href="https://github.com/MicronOxford" class="OWAAutoLink" id="LPlnk820134" previewremoved="true">https://github.com/MicronOxford</a>? Could it be? We've so far failed to get funding for OMERO.figure and cool use cases we haven't thought of would help. It would be great to see what you are doing, understand your workflow, and get ideas how we might improve things-- the spirit and practice of open source, and so on...</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">More to the point-- I definitely should have mentioned OMERO.figure. I was remiss (I plead fatigue and jetlag-- too many meetings in too many timezones). I should have pointed out that all the imaging figures in the Schleicher et al paper were made in OMERO.figure and all of them them are available in the public resource-- go to<span class="Apple-converted-space"> </span><a href="http://dx.doi.org/10.17867/10000109" class="OWAAutoLink" id="LPlnk152923" previewremoved="true">http://dx.doi.org/10.17867/10000109</a>, click on the "Figure" tab, Open File, and under owner select Katharina Schleicher. Not a perfect workflow yet, but getting there. It's critically important that we get your (and others) ideas and use cases for this. So far, the funding panels have not been convinced by OMERO.figure-- we need your help to convince them!</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">There is nothing to stop a journal including a link to an OMERO resource (e.g.,<span class="Apple-converted-space"> </span><a href="https://omero.lifesci.dundee.ac.uk/figure/file/364219" class="OWAAutoLink" id="LPlnk516260" previewremoved="true">https://omero.lifesci.dundee.ac.uk/figure/file/364219</a>) in a paper. They just need to do it! Maybe help us convince the journals that this would be a useful idea to consider??</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Integrating OMERO.figure into IDR? Interesting suggestion-- we should look at the workflow and presentation carefully. As is often the case, it's less about the technical capability and more about the ease and accessibility of the tool and workflow. </div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Thanks again for your thoughts! Keep them coming!</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Cheers,</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Jason<br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div id="Signature" class=""><div style="font-family: Tahoma; font-size: 13px;" class=""><div class=""><div class=""><div class=""><div class=""><div style="margin: 0px; font-size: 13px;" class=""><font size="2" class="">----------------------</font></div><div style="margin: 0px; font-size: 13px;" class=""><font size="2" class="">Centre for Gene Regulation & Expression | </font><span style="font-size: small;" class="">Open Microscopy Environment | </span><span style="font-size: small;" class="">University of Dundee </span></div><div style="margin: 0px; font-size: 13px;" class=""><font size="2" class=""><font size="2" class=""><br class=""></font></font></div><div style="margin: 0px; font-size: 13px;" class=""><span style="font-size: small;" class="">Phone: +44 (0) 1382 385819 </span></div><div style="margin: 0px; font-size: 13px;" class=""><font size="2" style="font-size: small;" class="">email: </font><a tabindex="0" href="https://dbxprd0410.outlook.com/owa/redir.aspx?C=XlY__cjOnUCLrUuc7zPnSr5hht0k884Icce5AfHAhv6fHZjWmwxAigQ84T9_MIRi02LghCy2-Tk.&URL=mailto%3aj.swedlow%40dundee.ac.uk" target="_blank" id="LPNoLP" style="font-size: small;" class=""><font size="2" class="">j.swedlow@dundee.ac.uk</font></a></div><div style="margin: 0px; font-size: 13px;" class=""><font size="2" class=""><font size="2" class=""> </font></font></div><div style="margin: 0px; font-size: 13px;" class=""><font size="2" class=""><font size="2" class="">Web: </font><a tabindex="0" href="https://dbxprd0410.outlook.com/owa/redir.aspx?C=XlY__cjOnUCLrUuc7zPnSr5hht0k884Icce5AfHAhv6fHZjWmwxAigQ84T9_MIRi02LghCy2-Tk.&URL=http%3a%2f%2fwww.lifesci.dundee.ac.uk%2fgre%2fstaff%2fjason-swedlow" target="_blank" id="LPNoLP" class=""><font size="2" class="">http://www.lifesci.dundee.ac.uk/gre/staff/jason-swedlow</font></a></font></div><div style="margin: 0px; font-size: 13px;" class=""><font size="2" class=""><font size="2" class="">Open Microscopy Environment: </font><a tabindex="0" href="https://dbxprd0410.outlook.com/owa/redir.aspx?C=XlY__cjOnUCLrUuc7zPnSr5hht0k884Icce5AfHAhv6fHZjWmwxAigQ84T9_MIRi02LghCy2-Tk.&URL=http%3a%2f%2fopenmicroscopy.org" target="_blank" id="LPNoLP" class=""><font size="2" class="">http://openmicroscopy.org</font></a></font></div><div style="margin: 0px; font-family: Tahoma; font-size: 13px;" class=""><font size="2" face="Helvetica" class=""><br class=""></font></div></div></div></div></div></div></div></div><hr tabindex="-1" style="display: inline-block; width: 1477.828125px;" class=""><div id="divRplyFwdMsg" dir="ltr" class=""><font face="Calibri, sans-serif" style="font-size: 11pt;" class=""><b class="">From:</b><span class="Apple-converted-space"> </span>ome-devel <<a href="mailto:ome-devel-bounces@lists.openmicroscopy.org.uk" class="">ome-devel-bounces@lists.openmicroscopy.org.uk</a>> on behalf of Ilan Davis <<a href="mailto:ilandavis@mac.com" class="">ilandavis@mac.com</a>><br class=""><b class="">Sent:</b><span class="Apple-converted-space"> </span>01 February 2018 07:33:27<br class=""><b class="">To:</b><span class="Apple-converted-space"> </span>OME External Developer List; King Charles House; <a href="mailto:darragh.ennis@bioch.ox.ac.uk" class="">darragh.ennis@bioch.ox.ac.uk</a>; Richard Parton; David Pinto<br class=""><b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [ome-devel] Updates on Data Publication</font><div class=""> </div></div><div dir="auto" class=""><div class=""><span class=""></span></div><div class="">Hi Jason<div class=""><br class=""><div class="">This is great and thanks for the update. Also congrats on your very nice paper in open bio. </div><div class=""><br class=""></div><div class="">I wonder whether you considered ways to include Figure as an option within the publication process. My lab now has a general system in place that people use Figure very effectively as a device to summarise “typical” data from each data set. This is an important shortcut to browse your own data and that of others and be able to record what people think is a correct summary of a data set. </div><div class=""><br class=""></div><div class="">In other words, publishing the original data transparently should be part of the publication process and your example in the open bio paper is great. It would also be good to be able to publish the figures in a paper as OMERO Figures that map each panel to the exact original data - as it does anyway at the moment. </div><div class=""><br class=""></div><div class="">Can that be achieved already with the existing omero server infrastructure? Can figure be integrated in some way within the IDR infrustructure so IDR can be used to publish data from individual low throughout papers as well as high throughout studies with the figures providing a high level Quick view and guide to the data?</div><div class=""><br class=""></div><div class="">Thanks</div><div class="">Regards</div><div class="">Ilan</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div id="x_AppleMailSignature" class="">Sent from my iPhone</div><div class=""><br class="">On 1 Feb 2018, at 01:46, Jason Swedlow (Staff) <<a href="mailto:j.r.swedlow@dundee.ac.uk" class="">j.r.swedlow@dundee.ac.uk</a>> wrote:<br class=""><br class=""></div><blockquote type="cite" class=""><div class=""><div class="x_WordSection1"><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">Dear All<span class="Apple-converted-space"> </span></span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">Just a quick update on our recent activities in data publication.</span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">IDR continues to receive datasets, and we have several exciting new datasets upcoming. Keep an eye on the announcements and let us know if you have a reference dataset that should be in IDR. See<span class="Apple-converted-space"> </span><a href="https://idr.openmicroscopy.org/about/submission.html" class="">https://idr.openmicroscopy.org/about/submission.html</a>.</span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">OME, as it always has, wants to make data publication from individual laboratories routine. That’s one of the big reasons to use OMERO in a lab or research institute. We’ve worked hard to make the process for publishing data easier in OMERO 5.4, and also better documented. We used OMERO 5.4’s features to publish data associated with a paper from our lab (some of you will correctly recognize this as a dogfooding exercise). The paper is at<a href="http://doi.org/10.1098/rsob.170099" class="">http://doi.org/<span lang="EN-GB" class="">10.1098/rsob.170099</span></a></span><span lang="EN-US" style="font-size: 11pt;" class="">,</span><span lang="EN-US" style="font-size: 11pt;" class=""><span class="Apple-converted-space"> </span>and the original image data is at<span class="Apple-converted-space"> </span></span><span style="font-size: 11pt;" class=""><a href="http://dx.doi.org/10.17867/10000109" class="">http://dx.doi.org/10.17867/10000109</a></span><span lang="EN-US" style="font-size: 11pt;" class="">. For more info, see our recent entry on the OME Blog (<a href="http://blog.openmicroscopy.org/community/2018/01/25/fair/" class="">http://blog.openmicroscopy.org/community/2018/01/25/fair/</a>).</span><span style="font-size: 11pt;" class=""></span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">And finally, we’ve contributed to a white paper that discusses the resources the community must (at least we think it must) build to make image data publication routine and universal. This is now on arxiv at<span class="Apple-converted-space"> </span><a href="https://arxiv.org/abs/1801.10189" class="">https://arxiv.org/abs/1801.10189</a> (it’s on arxiv because bioRxiv doesn't publish proposals and white papers; yes we did try to put it there first!).</span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">As always, we welcome your thoughts, comments, critiques, and ideas.</span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">Cheers,</span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><div style="margin-top: 0px; margin-bottom: 0px;" class=""><span lang="EN-US" style="font-size: 11pt;" class="">Jason</span></div><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p><p class="x_MsoNormal" style="margin-top: 0px; margin-bottom: 0px;"><span lang="EN-US" style="font-size: 11pt;" class=""> </span></p></div><br class=""><span style="font-size: 10pt;" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span></div></blockquote><blockquote type="cite" class=""><div class=""><span class="">_______________________________________________</span><br class=""><span class="">ome-devel mailing list</span><br class=""><span class=""><a href="mailto:ome-devel@lists.openmicroscopy.org.uk" class="">ome-devel@lists.openmicroscopy.org.uk</a></span><br class=""><span class=""><a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a></span><br class=""></div></blockquote></div></div></div></div></div><br style="font-family: Helvetica; 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