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Hi Romain,
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<div class="">The simplest approach is likely to use the Bio-Formats package from <a href="https://www.openmicroscopy.org/bio-formats/downloads/" class="">https://www.openmicroscopy.org/bio-formats/downloads/</a> which contains all of the components and necessary
dependencies to read images in ImageJ.</div>
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<div class="">Alternatively below you can find a list of the individual components (you will likely need the listed core components) along with a Maven example of how to add the components to your project:</div>
<div class=""><a href="https://docs.openmicroscopy.org/bio-formats/5.8.2/developers/components.html" class="">https://docs.openmicroscopy.org/bio-formats/5.8.2/developers/components.html</a></div>
<div class=""><a href="https://github.com/ome/bio-formats-examples/blob/master/pom.xml" class="">https://github.com/ome/bio-formats-examples/blob/master/pom.xml</a></div>
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<div class="">With thanks,</div>
<div class="">David Gault</div>
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<blockquote type="cite" class="">
<div class="">On 11 May 2018, at 15:58, Laine, Romain <<a href="mailto:r.laine@ucl.ac.uk" class="">r.laine@ucl.ac.uk</a>> wrote:</div>
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<span style="font-size: 11pt;" class="">Dear list,<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class="">I am developing an ImageJ java plugin using bio-format to load .sdt files using IntelliJ IDEA.<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class="">I am trying to use the openImagePlus method as described in the Simple_Read.java example.<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class="">However the loci.formats package seems to be missing from the bio-formats_plugins and therefore cannot be imported, so I cannot handle exceptions from openImagePlus.<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class="">I am using the latest build bio-formats_plugins-5.9.0-20180430.142015-2.jar<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class=""> </span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: Calibri, sans-serif;" class="">
<span style="font-size: 11pt;" class="">Has anyone encountered/solved that problem?<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class=""> <o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class="">Many thanks !<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class=""> <o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class="">Romain<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class=""> </span></div>
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<span style="font-size: 11pt;" class=""> </span></div>
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<span style="font-size: 10pt;" class="">____________________________________</span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<b class=""><span style="font-size: 10pt;" class="">Dr Romain F. Laine</span></b><span style="font-size: 10pt;" class="">, PhD in Biophotonics</span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class="">PDRA at the Quantitative Imaging and Nanobiophysics group</span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class="">MRC Laboratory of Molecular Cell Biology (LMCB)</span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class="">University College London</span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt;" class="">Gower Street, London, WC1E 6BT</span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<span style="font-size: 11pt;" class=""><a href="http://www.ucl.ac.uk/lmcb/users/romain-laine" target="_blank" style="color: rgb(149, 79, 114); text-decoration: underline;" class=""><span style="font-size: 10pt; color: rgb(5, 99, 193);" class="">http://www.ucl.ac.uk/lmcb/users/romain-laine</span></a></span><span style="font-size: 11.5pt; font-family: Tahoma, sans-serif; color: rgb(33, 33, 33);" class=""><o:p class=""></o:p></span></div>
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<o:p class=""> </o:p></div>
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