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<p class="MsoNormal">Hi All,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I just upgraded our OMERO server from 5.4.0 to 5.4.4. Everything seems to be working fine, except when I run:<o:p></o:p></p>
<p class="MsoNormal">$ bin/omero config list<o:p></o:p></p>
<p class="MsoNormal">I get:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><i>omero.data.dir=/data/vf-mcb-omero/OMERO<o:p></o:p></i></p>
<p class="MsoNormal"><i>omero.db.name=xxxxxxx<o:p></o:p></i></p>
<p class="MsoNormal"><i>Traceback (most recent call last):<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "bin/omero", line 125, in <module><o:p></o:p></i></p>
<p class="MsoNormal"><i> rv = omero.cli.argv()<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/cli.py", line 1620, in argv<o:p></o:p></i></p>
<p class="MsoNormal"><i> cli.invoke(args[1:])<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/cli.py", line 1095, in invoke<o:p></o:p></i></p>
<p class="MsoNormal"><i> stop = self.onecmd(line, previous_args)<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/cli.py", line 1172, in onecmd<o:p></o:p></i></p>
<p class="MsoNormal"><i> self.execute(line, previous_args)<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/cli.py", line 1254, in execute<o:p></o:p></i></p>
<p class="MsoNormal"><i> args.func(args)<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/plugins/prefs.py", line 74, in open_and_close_config<o:p></o:p></i></p>
<p class="MsoNormal"><i> return func(*args, **kwargs)<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/plugins/prefs.py", line 281, in list<o:p></o:p></i></p>
<p class="MsoNormal"><i> self.get(args, config)<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/plugins/prefs.py", line 74, in open_and_close_config<o:p></o:p></i></p>
<p class="MsoNormal"><i> return func(*args, **kwargs)<o:p></o:p></i></p>
<p class="MsoNormal"><i> File "/home/sa_omero/OMERO.server-5.4.4-ice36-b82/lib/python/omero/plugins/prefs.py", line 300, in get<o:p></o:p></i></p>
<p class="MsoNormal"><i> if is_password(k) and not args.show_password:<o:p></o:p></i></p>
<p class="MsoNormal"><i>AttributeError: 'Namespace' object has no attribute 'show_password'<o:p></o:p></i></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I upgraded using:<o:p></o:p></p>
<div style="mso-element:para-border-div;border-top:solid #AACC99 1.0pt;border-left:none;border-bottom:solid #AACC99 1.0pt;border-right:none;padding:4.0pt 0cm 4.0pt 0cm;background:#ECEFF1">
<p class="MsoNormal" style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm">
<span style="font-size:10.0pt;font-family:"Courier New";color:#455A64;mso-fareast-language:EN-GB">$ cd OMERO.server<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm">
<s><span style="font-size:10.0pt;font-family:"Courier New";color:#455A64;mso-fareast-language:EN-GB">$ bin/omero web stop (web is running in a seperate virtualenv)<o:p></o:p></span></s></p>
<p class="MsoNormal" style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm">
<span style="font-size:10.0pt;font-family:"Courier New";color:#455A64;mso-fareast-language:EN-GB">$ bin/omero admin stop<o:p></o:p></span></p>
<pre style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm"><span style="color:#455A64">$ cd ..<o:p></o:p></span></pre>
<pre style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm"><span style="color:#455A64">$ wget http://downloads.openmicroscopy.org/omero/5.4.4/artifacts/OMERO.py-5.4.4-ice36-b82.zip<o:p></o:p></span></pre>
<pre style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm"><span style="color:#455A64">$ mv OMERO.server OMERO.server-old<o:p></o:p></span></pre>
<pre style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm"><span style="color:#455A64">$ unzip OMERO.server-5.4.4-ice36-b82.zip<o:p></o:p></span></pre>
<pre style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm"><span style="color:#455A64">$ ln -s OMERO.server-5.4.4-ice36-b82 OMERO.server<o:p></o:p></span></pre>
<pre style="line-height:11.7pt;background:#ECEFF1;border:none;padding:0cm"><span style="color:#455A64">$ cp OMERO.server-old/etc/grid/config.xml OMERO.server/etc/grid<o:p></o:p></span></pre>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Did I miss any essential steps during the upgrade process?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Best,<o:p></o:p></p>
<p class="MsoNormal">Lennard<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="color:#1F497D;mso-fareast-language:EN-GB">-----------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;mso-fareast-language:EN-GB">dr.ir. Lennard Voortman<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;mso-fareast-language:EN-GB">Head Light Microscopy Facility<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;mso-fareast-language:EN-GB">Department of Cell and Chemical Biology<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;mso-fareast-language:EN-GB">Leiden University Medical Center<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="NL" style="color:#1F497D;mso-fareast-language:EN-GB">+31 71 5269216<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="NL" style="color:#1F497D;mso-fareast-language:EN-GB"><a href="mailto:l.m.voortman@lumc.nl"><span style="color:blue">l.m.voortman@lumc.nl</span></a><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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