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<p style="margin-top:0;margin-bottom:0">Hi Sebastien, thanks for the speedy reply.</p>
<p style="margin-top:0;margin-bottom:0">I got it to open up the files in the end. It turns out that it's super slow, taking around 10 mins to 7.4GB. I've contacted 3i to request some speed ups.</p>
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<p style="margin-top:0;margin-bottom:0">Thanks</p>
<p style="margin-top:0;margin-bottom:0">Neil</p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> ome-devel <ome-devel-bounces@lists.openmicroscopy.org.uk> on behalf of Sebastien Besson (Staff) <s.besson@dundee.ac.uk><br>
<b>Sent:</b> Friday, February 9, 2018 12:06:51 PM<br>
<b>To:</b> devel OME<br>
<b>Subject:</b> Re: [ome-devel] Slidebook sld file open error in Fiji</font>
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<div dir="auto" class="" style="word-wrap:break-word">Hi Neil,</div>
<div dir="auto" class="" style="word-wrap:break-word"><br class="">
</div>
<div dir="auto" class="" style="word-wrap:break-word">for recent SlideBook files, a native reader is developed and maintained</div>
<div dir="auto" class="" style="word-wrap:break-word">by 3i [1] which is recognized by Bio-Formats.</div>
<div dir="auto" class="" style="word-wrap:break-word">In Fiji, 3i also maintains a dedicated update site that you might want to</div>
<div dir="auto" class="" style="word-wrap:break-word">activate in order to open the file. See the 3i support page for more information [2].</div>
<div dir="auto" class="" style="word-wrap:break-word"><br class="">
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<div dir="auto" class="" style="word-wrap:break-word">Best,</div>
<div dir="auto" class="" style="word-wrap:break-word">Sebastien</div>
<div dir="auto" class="" style="word-wrap:break-word"><br class="">
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<div class="">[1] <a href="http://docs.openmicroscopy.org/bio-formats/5.7.3/formats/3i-slidebook.html" class="">http://docs.openmicroscopy.org/bio-formats/5.7.3/formats/3i-slidebook.html</a></div>
<div class="">[2] <a href="https://www.intelligent-imaging.com/technical-answers" class="">https://www.intelligent-imaging.com/technical-answers</a></div>
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<blockquote type="cite" class="">
<div class="">On 9 Feb 2018, at 16:15, Anthony, Neil <<a href="mailto:nantho2@emory.edu" class="">nantho2@emory.edu</a>> wrote:</div>
<br class="x_Apple-interchange-newline">
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<div class="" style="margin-top:0px; margin-bottom:0px">Hi all, I hope the data treats you well.</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><br class="">
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<div class="" style="margin-top:0px; margin-bottom:0px">I can't seem to get my slidebook file open with BF in Fiji. I get the below error. I've added Bioformats to my update site list and made sure all is up to date. I'll also post this to the ImageJ list
too, in case I have the wrong direction.</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><br class="">
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<div class="" style="margin-top:0px; margin-bottom:0px">Here is the sld file for reference:</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><a href="https://www.amazon.com/clouddrive/share/WBCXFTxSfyR4w2087RexdSYa8RJ8Eteg0S8q1lWfH3a" class="x_OWAAutoLink">https://www.amazon.com/clouddrive/share/WBCXFTxSfyR4w2087RexdSYa8RJ8Eteg0S8q1lWfH3a</a></div>
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<div class="" style="margin-top:0px; margin-bottom:0px">Any pointers are much appreciated. Please let me know if you need anything further from me to figure things out.</div>
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<div class="" style="margin-top:0px; margin-bottom:0px">Thanks</div>
<div class="" style="margin-top:0px; margin-bottom:0px">Neil</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><br class="">
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<div class="">(Fiji Is Just) ImageJ 2.0.0-rc-65/1.51s; Java 1.8.0_66 [64-bit]; Windows 10 10.0; 263MB of 392934MB (<1%)<br class="">
<br class="">
java.lang.ArrayIndexOutOfBoundsException: 0<br class="">
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:558)<br class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<br class="">
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:499)<br class="">
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)<br class="">
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<br class="">
at loci.plugins.in.Importer.run(Importer.java:76)<br class="">
at loci.plugins.LociImporter.run(LociImporter.java:78)<br class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<br class="">
at ij.IJ.runPlugIn(IJ.java:185)<br class="">
at ij.Executer.runCommand(Executer.java:137)<br class="">
at ij.Executer.run(Executer.java:66)<br class="">
at java.lang.Thread.run(Thread.java:745)<br class="">
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