<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body dir="auto"><div><span></span></div><div>Hi Jason<div><br><div>This is great and thanks for the update. Also congrats on your very nice paper in open bio. </div><div><br></div><div>I wonder whether you considered ways to include Figure as an option within the publication process. My lab now has a general system in place that people use Figure very effectively as a device to summarise “typical” data from each data set. This is an important shortcut to browse your own data and that of others and be able to record what people think is a correct summary of a data set. </div><div><br></div><div>In other words, publishing the original data transparently should be part of the publication process and your example in the open bio paper is great. It would also be good to be able to publish the figures in a paper as OMERO Figures that map each panel to the exact original data - as it does anyway at the moment. </div><div><br></div><div>Can that be achieved already with the existing omero server infrastructure? Can figure be integrated in some way within the IDR infrustructure so IDR can be used to publish data from individual low throughout papers as well as high throughout studies with the figures providing a high level Quick view and guide to the data?</div><div><br></div><div>Thanks</div><div>Regards</div><div>Ilan</div><div><br></div><div><br></div><div><br></div><div><br><div id="AppleMailSignature">Sent from my iPhone</div><div><br>On 1 Feb 2018, at 01:46, Jason Swedlow (Staff) <<a href="mailto:j.r.swedlow@dundee.ac.uk">j.r.swedlow@dundee.ac.uk</a>> wrote:<br><br></div><blockquote type="cite"><div>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Dear All <o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Just a quick update on our recent activities in data publication.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">IDR continues to receive datasets, and we have several exciting new datasets upcoming. Keep an eye on the announcements and let us know if you have a reference dataset that should be in IDR.
See <a href="https://idr.openmicroscopy.org/about/submission.html">https://idr.openmicroscopy.org/about/submission.html</a>.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">OME, as it always has, wants to make data publication from individual laboratories routine. That’s one of the big reasons to use OMERO in a lab or research institute. We’ve worked hard to make
the process for publishing data easier in OMERO 5.4, and also better documented. We used OMERO 5.4’s features to publish data associated with a paper from our lab (some of you will correctly recognize this as a dogfooding exercise). The paper is at
<a href="http://doi.org/10.1098/rsob.170099">http://doi.org/<span lang="EN-GB" style="mso-fareast-language:EN-GB">10.1098/rsob.170099</span></a></span><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-GB">,</span><span lang="EN-US" style="font-size:11.0pt">
and the original image data is at </span><span style="font-size:11.0pt"><a href="http://dx.doi.org/10.17867/10000109">http://dx.doi.org/10.17867/10000109</a></span><span lang="EN-US" style="font-size:11.0pt">. For more info, see our recent entry on the OME
Blog (<a href="http://blog.openmicroscopy.org/community/2018/01/25/fair/">http://blog.openmicroscopy.org/community/2018/01/25/fair/</a>).
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">And finally, we’ve contributed to a white paper that discusses the resources the community must (at least we think it must) build to make image data publication routine and universal. This is
now on arxiv at <a href="https://arxiv.org/abs/1801.10189">https://arxiv.org/abs/1801.10189</a> (it’s on arxiv because bioRxiv doesn't publish proposals and white papers; yes we did try to put it there first!).<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">As always, we welcome your thoughts, comments, critiques, and ideas.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Cheers,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Jason<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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