<div dir="ltr"><div>Hi Laurent,</div><div><br></div><div>Repackaging the prokaryote.jar with appropriate jars would be probably the most efficient route in your case. Sorry, I wasn't aware you're using the GUI mode - should have asked. We have not attempted yet to package the CellProflier itself with the python readers as we're mainly using it in the headless mode. I happy to document the set up process for python readers if you're interested.</div><div><br></div><div>Cheers,</div><div>Emil</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Sep 13, 2017 at 3:26 PM, Laurent Guerard <span dir="ltr"><<a href="mailto:laurent.guerard@unibas.ch" target="_blank">laurent.guerard@unibas.ch</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<p><font face="Ubuntu">Hi Emil,</font></p>
<p><font face="Ubuntu">If I understood everything, all the jars are
part of the prokaryote.jar which I would need to extract and rearchive
right ?</font></p>
<p>Using python readers would be the best solution indeed, and we
would be interested in that. However, since we would need to fix
this on multiple computers, is it easily deployable ? And would
you have some documentation on how to set it up ? :)</p>
<p>Thanks again !</p>
<p>Best,<br>
</p>
<div class="m_-4976640546338776689moz-signature">--------------- <br>
Laurent Guerard <br>
<br>
<br>
</div><div><div class="h5">
<div class="m_-4976640546338776689moz-cite-prefix">On 13/09/2017 10:42, Emil Rozbicki
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Hi Kai,
<div><br>
</div>
<div>Have you also updated CellProfiler's OMERO jars? It's
possible that your CellProfiler installation is still using
OMERO 5.2 jars hence the connection issue.</div>
<div><br>
</div>
<div>If that's the case the simplest solution is to replace the
jars to match your server version. Alternative solution is to
use python readers instead of java readers - details here: <a href="https://github.com/CellProfiler/CellProfiler/issues/1772" target="_blank">https://github.com/<wbr>CellProfiler/CellProfiler/<wbr>issues/1772</a>.
It needs some work to set it up put pays back on performance
and the issue free upgrades.</div>
<div><br>
</div>
<div>Cheers,</div>
<div>Emil</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Tue, Sep 12, 2017 at 5:19 PM, Kai
Schleicher <span dir="ltr"><<a href="mailto:kai.schleicher@unibas.ch" target="_blank">kai.schleicher@unibas.ch</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
We were using CellProfilers "LoadData" module successfully
with OMERO 5.2.4 to fetch images directly from OMERO.<br>
<br>
We recently upgraded to the really awesome OMERO 5.3.3 (yay
:)), but coincidentally we seem to now have issues using CPs
LoadData module to fetch the images.<br>
<br>
Can you confirm if this connection is still possible with
OMERO 5.3.3 or if there is maybe an issue?<br>
<br>
Thanks for your help and cheers,<br>
Kai<span class="m_-4976640546338776689HOEnZb"><font color="#888888"><br>
<br>
-- <br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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