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<p>Hi Curtis,</p>
<p>thanks for your reply and for clarification! <br>
I was using the [2], i.e. the OMERO.insight-ij integration and
opened the tl data as a virtual stack.</p>
<p>Cheers,<br>
Kai<br>
</p>
<br>
<div class="moz-cite-prefix">On 01/20/2017 01:41 PM, Curtis Rueden
wrote:<br>
</div>
<blockquote
cite="mid:%3CCADN69ymnqvV+LwyD=j=N5qK3=XGrZdV_Pc9SX73PsPc5oshOrw@mail.gmail.com%3E"
type="cite">
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<div dir="ltr">Hi Kai,
<div><br>
</div>
<div>
<div>> viewing the images in FIJI when fetched via the
FIJI-OMERO-connector</div>
<div>> using virtual stack.</div>
</div>
<div><br>
</div>
<div>I am curious: do you mean ImageJ-OMERO [1]? Or the
OMERO.insight-ij integration [2]?</div>
<div><br>
</div>
<div>Regards,</div>
<div>Curtis</div>
<div><br>
</div>
<div>[1] <a moz-do-not-send="true"
href="https://github.com/imagej/imagej-omero">https://github.com/imagej/imagej-omero</a><br>
</div>
<div>
<div>[2] <a moz-do-not-send="true"
href="http://help.openmicroscopy.org/imagej.html">http://help.openmicroscopy.org/imagej.html</a></div>
</div>
</div>
<div class="gmail_extra"><br clear="all">
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<div class="gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
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<div dir="ltr">
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<div dir="ltr">
<div><span style="font-size:12.8px">--</span></div>
<div><span style="font-size:12.8px">Curtis Rueden</span><br>
</div>
<div><span style="font-size:12.8px">LOCI software
architect - <a moz-do-not-send="true"
href="http://loci.wisc.edu/software"
target="_blank">http://loci.wisc.edu/software</a></span></div>
<div>ImageJ2 lead, Fiji maintainer - <span
style="font-size:12.8px"><a
moz-do-not-send="true"
href="http://imagej.net/User:Rueden"
target="_blank"><a class="moz-txt-link-freetext" href="http://imagej.net/User:Rueden">http://imagej.net/User:Rueden</a></a></span></div>
<div>Did you know ImageJ has a forum? <a
moz-do-not-send="true"
href="http://forum.imagej.net/"
target="_blank"><a class="moz-txt-link-freetext" href="http://forum.imagej.net/">http://forum.imagej.net/</a></a></div>
<div><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
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<br>
<div class="gmail_quote">On Fri, Jan 20, 2017 at 6:37 AM, Kai
Schleicher <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:kai.schleicher@unibas.ch" target="_blank">kai.schleicher@unibas.ch</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
In our facility we have a couple of users that store large
time laps datasets in OMERO.<br>
Viewing these, i.e. replaying and scrolling around in these
tl files is however problematic when using the OMERO viewer,
with several seconds long pauses when jumping between frames
depending on the size of the images (e.g. ).<br>
<br>
I did however notice that there are performance difference
depending on the viewer that is used. Here I have tested the
web-viewer, desctop-client-viewer and viewing the images in
FIJI when fetched via the FIJI-OMERO-connector using virtual
stack.<br>
<br>
While the desktop-clients-viewer performs about 40% faster
than the web-client, the FIJI-OMERO connector provided
another increase of about 40% in replay speed compared to
the desktop-client.<br>
<br>
While I am aware that these viewers are not meant to be
optimal for tl-data, my tests make me wonder if it would be
possible to write a simple viewer (e.g. in python) dedicated
to only this task and optimise it for speed.<br>
I apologise if this question is very naive (and I am also
_not_ asking you to write a new viewer :)), but I was simply
wondering if there is any potential improving the situation
for our users by this approach.<br>
<br>
Of course, if you happen to know other factors that also
influence the speed at which tl data is replayed, e.g. the
file format used, let me know and I'd be happy to try them
outI'd be happy to know and try them out.<br>
<br>
Thanks for your help and cheers,<br>
Kai<span class="HOEnZb"><font color="#888888"><br>
<br>
-- <br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
Please note my NEW PHONE NUMBERS: <a
moz-do-not-send="true"
href="tel:%2B41%2061%20207%2057%2031"
value="+41612075731" target="_blank">+41 61 207 57
31</a> (direct) <a moz-do-not-send="true"
href="tel:%2B41%2061%20207%2022%2050"
value="+41612072250" target="_blank">+41 61 207 22
50</a> (central)<<<br>
</blockquote>
</blockquote>
Kai Schleicher, PhD | Research Associate in Advanced
Light Microscopy | Biozentrum, University of Basel |
Klingelbergstrasse 50/70 | CH-4056 Basel |<br>
Phone: <a moz-do-not-send="true"
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(central) | <a moz-do-not-send="true"
href="mailto:kai.schleicher@unibas.ch" target="_blank">kai.schleicher@unibas.ch</a>
| <a moz-do-not-send="true"
href="http://www.biozentrum.unibas.ch"
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href="http://www.microscopynetwork.unibas.ch"
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