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<span class="">Hi Paul,<br class="">
</span><span class=""><br class="">
</span><span class="">Thanks for getting back to us. We certainly recorded this memoizer limitation in a card but did not have</span>
<div class=""><span class="">time to get back to </span>it in time for Bio-Formats 5.2.0.
<div class=""><span class=""><br class="">
</span><span class="">Unfortunately the required changes to set the minmax within a format reader are breaking. As we are</span></div>
<div class=""><span class="">trying to keep the changes in the Bio-Formats 5.3+ line backwards-compatible, this means we will not be</span></div>
<div class=""><span class="">able to put</span> these changes in place before the next round of breaking changes in Bio-Formats 6.x for which</div>
<div class="">we currently have no defined roadmap/timeline.</div>
<div class=""><span class=""><br class="">
</span><span class="">Best,<br class="">
</span><span class="">Sebastien</span>
<div class=""><font face="Arial" class=""><span style="font-size: 15px;" class=""><br class="">
</span></font>
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<blockquote type="cite" class="">
<div class="">On 16 Dec 2016, at 12:44, Paul van Schayck <<a href="mailto:paul@vanschayck.nl" class="">paul@vanschayck.nl</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">Hi Melissa,<br class="">
<br class="">
At the beginning of this year we exchanged a few emails regarding<br class="">
setting the minmax from within a format reader. This was not working.<br class="">
You described the problem as the memoizer nog passing along the min<br class="">
max values. See also below.<br class="">
<br class="">
I was wondering if you've made any progress on this issue. The linked<br class="">
Trello card does not exist anymore. This PR looks related, but I'm not<br class="">
sure it solves it.<br class="">
<br class="">
<a href="https://github.com/openmicroscopy/bioformats/pull/2672" class="">https://github.com/openmicroscopy/bioformats/pull/2672</a><br class="">
<br class="">
Thanks for any update you can provide on this.<br class="">
<br class="">
Paul<br class="">
<br class="">
On Wed, Jan 13, 2016 at 10:19 PM, Melissa Linkert<br class="">
<melissa@glencoesoftware.com> wrote:<br class="">
<blockquote type="cite" class="">
<blockquote type="cite" class="">
<blockquote type="cite" class="">If PyramidTiffReader is definitely being used and the StatsInfo still<br class="">
doesn't show up in OMERO, then I'd suggest opening a Bio-Formats pull<br class="">
request with the changes you've made so far, so that we can better see<br class="">
what the problem might be.<br class="">
</blockquote>
<br class="">
I've pushed my changes to a branch here:<br class="">
<br class="">
https://github.com/M4I-nanoscopy/bioformats/commit/c8575e6ef17b29b63db88d52fa6b094b23b013eb<br class="">
<br class="">
When running this I can see this in the log:<br class="">
<br class="">
2016-01-08 16:44:01,535 INFO [<br class="">
loci.formats.ImageReader] (l.Server-3) PyramidTiffReader initializing<br class="">
2016-01-08 16:44:01,536 INFO [<br class="">
loci.formats.in.MinimalTiffReader] (l.Server-3) Reading IFDs<br class="">
2016-01-08 16:44:01,536 INFO [<br class="">
loci.formats.in.MinimalTiffReader] (l.Server-3) Populating metadata<br class="">
2016-01-08 16:44:01,539 INFO [<br class="">
loci.formats.in.BaseTiffReader] (l.Server-3) Populating OME metadata<br class="">
2016-01-08 16:44:01,539 INFO [<br class="">
loci.formats.in.PyramidTiffReader] (l.Server-3) Before minmax<br class="">
<br class="">
The "Setting minmax" which should be logged does not show up.<br class="">
</blockquote>
<br class="">
Thank you for pushing the commit - I can reproduce the same behavior now.<br class="">
The details of the problem and what we need to fix are here:<br class="">
<br class="">
https://trello.com/c/QdCI9tHU/79-memoizer-does-not-pass-along-min-max-values<br class="">
<br class="">
</blockquote>
_______________________________________________<br class="">
ome-devel mailing list<br class="">
ome-devel@lists.openmicroscopy.org.uk<br class="">
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel<br class="">
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</blockquote>
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