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<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF">Hi All<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF">I have seen a code like below<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><a href="https://www.openmicroscopy.org/community/viewtopic.php?f=15&t=524">https://www.openmicroscopy.org/community/viewtopic.php?f=15&t=524</a><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF">Kindly let me know how to use OME in c#.<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF">Please send a sample.<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:#2B91AF">FileStream</span><span style="font-size:9.5pt;font-family:Consolas"> stream =
<span style="color:blue">new</span> <span style="color:#2B91AF">FileStream</span>(<span style="color:#A31515">"somefile.xml"</span>,
<span style="color:#2B91AF">FileMode</span>.Open);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas">
<span style="color:#2B91AF">XmlSerializer</span> formatter = <span style="color:blue">
new</span> <span style="color:#2B91AF">XmlSerializer</span>(<span style="color:blue">typeof</span>(<span style="color:red">OME</span>));<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas">
<span style="color:red">OME</span> ome = (<span style="color:red">OME</span>)formatter.Deserialize(stream);<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Parvathy Pillai
<br>
<b>Sent:</b> Tuesday, 8 November 2016 3:56 PM<br>
<b>To:</b> 'ome-devel@lists.openmicroscopy.org.uk'<br>
<b>Subject:</b> RE: Issue happened while using bfConverter<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi All<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">When I try to convert the file got the below exception.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Kindly help me on the same.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">C:\Users\ParvathyP>C:\Downloads\bftools\bftools\bfconvert -bigtiff C:\OptiscanCo<o:p></o:p></p>
<p class="MsoNormal">nfocalImages\OME1\OME1.tiff C:\OptiscanConfocalImages\OME1\OME1.ome.tiff<o:p></o:p></p>
<p class="MsoNormal">C:\OptiscanConfocalImages\OME1\OME1.tiff<o:p></o:p></p>
<p class="MsoNormal">TiffDelegateReader initializing C:\OptiscanConfocalImages\OME1\OME1.tiff<o:p></o:p></p>
<p class="MsoNormal">Reading IFDs<o:p></o:p></p>
<p class="MsoNormal">Populating metadata<o:p></o:p></p>
<p class="MsoNormal">Checking comment style<o:p></o:p></p>
<p class="MsoNormal">Populating OME metadata<o:p></o:p></p>
<p class="MsoNormal">[Tagged Image File Format] -> C:\OptiscanConfocalImages\OME1\OME1.ome.tiff [OME-<o:p></o:p></p>
<p class="MsoNormal">TIFF]<o:p></o:p></p>
<p class="MsoNormal">Exception in thread "main" loci.formats.UnsupportedCompressionException: Sorry,<o:p></o:p></p>
<p class="MsoNormal">CCITT T.6 bi-level encoding (Group 4 Fax) compression mode is not supported<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tiff.TiffCompression.decompress(TiffCompression.java:276<o:p></o:p></p>
<p class="MsoNormal">)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tiff.TiffParser.getTile(TiffParser.java:743)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:986)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:783)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.in.MinimalTiffReader.openBytes(MinimalTiffReader.java:29<o:p></o:p></p>
<p class="MsoNormal">9)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.DelegateReader.openBytes(DelegateReader.java:227)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.FormatReader.openBytes(FormatReader.java:890)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.ImageReader.openBytes(ImageReader.java:437)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:63<o:p></o:p></p>
<p class="MsoNormal">4)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:559<o:p></o:p></p>
<p class="MsoNormal">)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.tools.ImageConverter.main(ImageConverter.java:880)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Courier New"">Parvathy Pillai<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Courier New"">Phone : +61 3
<span style="color:black">9538-3333</span></span><u><span style="font-size:12.0pt;font-family:"Times New Roman","serif"">
</span></u><u><span style="font-size:10.0pt;font-family:"Courier New";color:blue"><<a href="http://www.optiscan.com/" target="_blank">http://www.optiscan.com</a>></span></u><span style="font-size:12.0pt;font-family:"Times New Roman","serif"">
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:7.5pt;font-family:"Arial","sans-serif";color:black">This email may contain confidential information. If you have received this email in error, please delete it immediately, and inform us of the mistake by return email.
Any form of reproduction, or further dissemination of this email is strictly prohibited. Also, please note that opinions expressed in this email are those of the author, and are not necessarily those of Optiscan Pty Ltd.</span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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