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Thanks Simon,<br>
<br>
I'm using the tools in our daily workflow now and will have more
feedback. But so far, it's all meeting my needs.<br>
<br>
For my need to delete the previous bulkmap annotations I kludged up
a a few lines of shell script that work. It's pretty ugly but may
indicate what's needed:<br>
<blockquote type="cite"> # identify Screen ID and delete old
bulk_annotation<br>
s_id=$(omero hql --style=plain --all -q --limit=10 "select
s from Screen s where s.name = '$arg' " | cut -f3 -d, )<br>
OA=$(omero hql -q --all --style plain --limit 1 "select
'/FileAnnotation:'||f.id from ScreenAnnotationLink l,
FileAnnotation f join l.child where l.child = f and l.parent.id =
'$s_id' and f.description = 'bulk_annotations' " | cut -f2 -d,)<br>
if [ "$OA" == "" ]; then omero delete $OA; fi<br>
</blockquote>
<br>
Am I correct in assuming that deleting the bulk-annotations
FileAnnotation deletes the OMERO.table associated with that Screen
and makes everything "virgin" again?<br>
<br>
Thanks,<br>
- Damir<br>
<br>
<div class="moz-cite-prefix">On 7/8/2016 12:21 PM, Simon Li wrote:<br>
</div>
<blockquote
cite="mid:CAMvbRBE-puT4vGOW5tH1-xP4scUu7NM1z=Utd6Rz9ZzUmKyzuA@mail.gmail.com"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
<p dir="ltr">Hi Damir</p>
<p dir="ltr">Thanks for your feedback! Improving the map
annotation processing (which may include removing duplicates,
deleting, merging and replacing) is definitely on our todo list,
along with tools for viewing them, keep an eye on the mailing
lists for updates.</p>
<p dir="ltr">If you've got any other suggestions, big or small,
let us know. We want to release the metadata work as a
production quality tool, so any external feedback is especially
welcome.</p>
<p dir="ltr">Simon</p>
<div class="gmail_quote">On 8 Jul 2016 19:54, "Damir Sudar" <<a
moz-do-not-send="true" href="mailto:dsudar@lbl.gov">dsudar@lbl.gov</a>>
wrote:<br type="attribution">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">Hi Eleanor and team,<br>
<br>
I've been having a lot of fun with all the tools you all
have developed in the IDR context. Most of them work
extremely well as is for my purpose. With the CLI metadata
tools my whole workflow is quite smooth. I look forward to a
bit more documentation but with built-in help and sometimes
a look at the source, I figured out most of the
functionality. Since I'm still in development mode, the
"--context deletemap" option is extremely useful. One thing
I'm missing is an option such as "--context
delete_bulk_annotations" to conveniently get rid of the
previous version.<br>
<br>
Per my earlier message, I ran into an issue with plates with
more than 26 rows but Will Moore's partial patch got me over
that issue for the time being.<br>
<br>
Thanks,<br>
- Damir<br>
<br>
<div>On 6/27/2016 2:03 PM, Eleanor Williams wrote:<br>
</div>
<blockquote type="cite">
<p>Hi Damir</p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">To
convert the omero tables to key-value pairs
annotations we are again using the CLI metadata
populate script along with a yaml-format configuration
file to specify which columns we want to take from the
omero tables and put into Key-Value Annotations.
<br>
</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline"><br>
</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">This
component of the metadata functionality is still in
the development stage and so to use it you need to:</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline"><br>
</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">1.
use the latest version of omero (5.2.4) and</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">2.
then run as</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">OMERO_DEV_PLUGINS=1
bin/omero metadata populate --context bulkmap --cfg
bulkmap-config.yml Screen:n</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">where
n is the screen number in omero.</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline"><br>
</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">An
example config file for one of our screens is here</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><a
moz-do-not-send="true"
href="https://github.com/IDR/idr-metadata/blob/master/idr0002-heriche-condensation/screenA/idr0002-screenA-bulkmap-config.yml"
style="text-decoration:none" target="_blank"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#1155cc;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:underline;vertical-align:baseline"></span></a><a
moz-do-not-send="true"
href="https://github.com/IDR/idr-metadata/blob/master/idr0002-heriche-condensation/screenA/idr0002-screenA-bulkmap-config.yml"
target="_blank">https://github.com/IDR/idr-metadata/blob/master/idr0002-heriche-condensation/screenA/idr0002-screenA-bulkmap-config.yml</a></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline"><br>
</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">You
can see I have just picked out some of the columns
from the</span><a moz-do-not-send="true"
href="https://github.com/IDR/idr-metadata/blob/master/idr0002-heriche-condensation/screenA/idr0002-screenA-annotation.csv"
style="text-decoration:none" target="_blank"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline"></span><span
style="font-size:14.666666666666666px;font-family:Arial;color:#1155cc;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:underline;vertical-align:baseline">annotation.csv</span></a><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">
file, in this case ones that I thought IDR users might
use as search terms, and I have specified URLs for
some. You can also change the 'display name' of the
column using the ' clientname' tag and create URLs
using the 'clientvalue' tag. </span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline"><br>
</span></p>
<p dir="ltr"
style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span
style="font-size:14.666666666666666px;font-family:Arial;color:#000000;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline">Let
us know if you have any problems running this, or
suggestions for improvement.</span></p>
Best regards<br>
Eleanor<br>
<br>
<div>On 27/06/2016 03:04, Damir Sudar wrote:<br>
</div>
<blockquote type="cite">Hi Eleanor and Josh,<br>
<br>
I'm learning a lot from your work on putting the IDR
together and I'm applying it for our image repository
for our LINCS project (<a moz-do-not-send="true"
href="http://www.lincsproject.org/centers/data-and-signature-generating-centers/oregon-u/"
target="_blank">http://www.lincsproject.org/centers/data-and-signature-generating-centers/oregon-u/</a>)
that hopefully will go live in a few months. We're also
looking at Zegami as a possible way to provide
visualizations of that data (Great demo, Roger!! and
thanks for the code for that).<br>
<br>
I've gotten as far as putting my metadata into a a
format that can be used to generate the omero tables
using the Populate Metadata script. But I couldn't find
how you guys then populate the Key-Value Annotations. It
appears to be a subset of what's in the Tables. Do you
have some magic scripts for that and are those
available?<br>
<br>
Cheers,<br>
- Damir<br>
<br>
<div>On 6/16/2016 2:21 AM, Eleanor Williams wrote:<br>
</div>
<blockquote type="cite">
<p>Hi Steve and Roger<br>
</p>
<p>I think idr0002-heriche-condensation would be a
good screen to start with. It is relatively small
at 12 plates and has good annotation with control,
quality control and phenotype values. It can be
found here
<a moz-do-not-send="true"
href="http://idr-demo.openmicroscopy.org/webclient/?show=screen-102"
target="_blank">
http://idr-demo.openmicroscopy.org/webclient/?show=screen-102</a>.<br>
</p>
<p>I am doing a bit of a stock-take of the annotation
files I've produced so far and will be changing a
few aspects over the next few weeks, mainly to
include more of the information that is currently
held in the study files. For example I'd like to
get more of the sample attributes such as species
and cell line into the annotation.csv file, and then
into the omero tables and Map Annotations. Sample
attributes for screens were originally recorded in
the study file because it didn't vary per screen,
but now that we are also looking at non-screen data
where this might vary it makes sense to always have
it visible with the images. Also we haven't got as
far as exposing much of the study information in
omero yet.
<br>
</p>
<p>I would really like to work with you to understand
how you are going to use the experimental and
analytic annotations and how we can help in
providing the metadata you need and in the most
usable format. For example would it be useful if I
indicate what is sample attribute information in the
annotation.csv file by using something like a
constistent header format e.g. Characterisics
[Organism], Characteristics [Cell Line],
Characteristics [Organism Part] etc, or is this not
really necessary for your purposes and 'Organism',
'Cell Line' column headings would be enough? <br>
</p>
<p>Finally, it was <a moz-do-not-send="true"
href="https://www.openmicroscopy.org/site/about/development-teams/jason/balaji.png/view"
target="_blank">
Balaji Ramalingam</a> that you were talking to
about streaming the thumbnails. I'm sure he would
be happy to discuss this further with you.
<br>
</p>
<p>Best regards</p>
<p>Eleanor</p>
<p><br>
</p>
<p><br>
</p>
<br>
<div>On 15/06/2016 20:59, Josh Moore wrote:<br>
</div>
<blockquote type="cite">
<pre>Forwarding this to the mailing list so that anyone who had expressed
interested in <a moz-do-not-send="true" href="http://zegami.com/" target="_blank">http://zegami.com/</a> at this year's users' meeting can
follow along.
Cheers,
~Josh
P.S. If you weren't able to attend #OME2016, a recap is now up on the
blog <a moz-do-not-send="true" href="http://blog.openmicroscopy.org/community/2016/06/15/user-meeting/" target="_blank">http://blog.openmicroscopy.org/community/2016/06/15/user-meeting/</a>
---------- Forwarded message ----------
From: Stephen Taylor <a moz-do-not-send="true" href="mailto:stephen.taylor@imm.ox.ac.uk" target="_blank"><stephen.taylor@imm.ox.ac.uk></a>
Date: Tue, Jun 14, 2016 at 8:17 AM
Subject: Re: [IDR Project] Zegami / IDR
Cc: Roger Noble <a moz-do-not-send="true" href="mailto:roger@zegami.com" target="_blank"><roger@zegami.com></a>
Hi,
I’ve been look at a few examples from the link Josh sent to me and
there are quite a lot! What would be a good data set to get import
into Zegami from IDR? I am thinking a set that has decent metadata
and a study that people are more familiar with that would make an
interesting use case.
Kind regards,
Steve
From: Stephen Taylor
Sent: 10 June 2016 14:25
Cc: Roger Noble <a moz-do-not-send="true" href="mailto:roger@zegami.com" target="_blank"><roger@zegami.com></a>; '<a moz-do-not-send="true" href="mailto:e.x.williams@dundee.ac.uk" target="_blank">e.x.williams@dundee.ac.uk</a>'
<a moz-do-not-send="true" href="mailto:e.x.williams@dundee.ac.uk" target="_blank"><e.x.williams@dundee.ac.uk></a>
Subject: RE: [IDR Project] Zegami / IDR
Hi all,
I am interested generally in getting data in and out of OMERO from
both internal and external. Over a WAN the images are less of an issue
since they are streamed on demand but large metadata on the other hand
can get out of hand since it all has to be loaded completely into
Zegami’s database.
Currently I do “OMERO project” to “Zegami collection” using a Zegami
export script (modified version of the OMERO batch export script).
This takes a project or selection of images from OMERO and produces
thumbnails and data in tab delimited Zegami format and then I manually
import that into Zegami for processing. The OMERO id is preserved so I
can link to the original image in OMERO using the OMERO web client. I
only export certain metadata currently (filenames and OMERO tags) and
my plan is to make this more comprehensive and allow MapAnnotations
and Tables to be exported using this mechanism as well. I need to find
out more how to query these data types. Since we have internal
projects at Oxford that need this I’d like to finish this and make
that plugin freely available for other OMERO users to publish their
data in Zegami.
Longer term for IDR/Zegami
One of your team (apologies I didn’t get his name but he was doing
OMERO/ImageJ in the Unconference session) suggested we just stream in
the thumbnail and just have 1 level (i.e. no zoom) and when you want
to see the image just open it up in OMERO. This would not be as nice
to use but may be sufficient for HCS and would allow you to use
Zegami’s facet based query engine and would be probably little (no?)
work for you guys. We need to test this to see what it looks like and
it assumes OMERO can supply a unique thumbnail URL for each image and
that the metadata will provide a primary key so that we can get to
this image via a thumbnail id. To get at the metadata Josh and Eleanor
said they were thinking of making the CSV downloadable for a
collection, which could be loaded into Zegami on the fly (we have
instances where we dynamically load metadata via URL already).
However, major caveat is on how well this would perform over a WAN
with a large amount of data.
BTW we have developer docs for Zegami for those interested at:
<a moz-do-not-send="true" href="https://support.zegami.com/hc/en-us/categories/200350657-Developers" target="_blank">https://support.zegami.com/hc/en-us/categories/200350657-Developers</a>
and would welcome feedback.
Kind regards and thanks,
Steve
From: Jason Swedlow (Staff) [<a moz-do-not-send="true" href="mailto:j.r.swedlow@dundee.ac.uk" target="_blank">mailto:j.r.swedlow@dundee.ac.uk</a>]
Sent: 08 June 2016 13:09
Cc: Eleanor Williams (Staff) <a moz-do-not-send="true" href="mailto:e.x.williams@dundee.ac.uk" target="_blank"><e.x.williams@dundee.ac.uk></a>
Subject: Re: [IDR Project] Zegami / IDR
Hi Josh et al—
My two cents— can we consider this use case from an external users’
perspective, mindful that distribution of such a solution would
definitely cause us to consider how we ship thumbnails, handle
straws, etc.
Cheers,
Jason
On Wed, Jun 8, 2016 at 1:31 PM, Josh Moore <a moz-do-not-send="true" href="mailto:josh@glencoesoftware.com" target="_blank"><josh@glencoesoftware.com></a> wrote:
Stephen,
On Wed, Jun 8, 2016 at 9:52 AM, Stephen Taylor
<a moz-do-not-send="true" href="mailto:stephen.taylor@imm.ox.ac.uk" target="_blank"><stephen.taylor@imm.ox.ac.uk></a> wrote:
</pre>
<blockquote type="cite">
<pre>Hi Josh,
Yes! What would be the best way of bulk downloading the thumbnails for a screen or plate
</pre>
</blockquote>
<pre>Interesting question. Guess the reverse question is: do you want to do
this as an external user or as if you had access to the OMERO?
</pre>
<blockquote type="cite">
<pre>( I notice the "Run Script" button isn't active ).
</pre>
</blockquote>
<pre>Correct. This server is stripped down in several ways as a public resource.
~J.
</pre>
<blockquote type="cite">
<pre>Kind regards,
Steve
</pre>
</blockquote>
<pre>-----Original Message-----
From: Josh Moore [<a moz-do-not-send="true" href="mailto:josh@glencoesoftware.com" target="_blank">mailto:josh@glencoesoftware.com</a>]
Sent: 08 June 2016 08:07
To: Stephen Taylor <a moz-do-not-send="true" href="mailto:stephen.taylor@imm.ox.ac.uk" target="_blank"><stephen.taylor@imm.ox.ac.uk></a>
Cc: Eleanor Williams <a moz-do-not-send="true" href="mailto:exwilliams@dundee.ac.uk" target="_blank"><exwilliams@dundee.ac.uk></a>;
<a moz-do-not-send="true" href="mailto:e.x.williams@dundee.ac.uk" target="_blank">e.x.williams@dundee.ac.uk</a>; <a moz-do-not-send="true" href="mailto:j.a.moore@dundee.ac.uk" target="_blank">j.a.moore@dundee.ac.uk</a>
Subject: Re: Zegami / IDR
Hi Stephen,
On Wed, Jun 8, 2016 at 8:40 AM, Stephen Taylor
<a moz-do-not-send="true" href="mailto:stephen.taylor@imm.ox.ac.uk" target="_blank"><stephen.taylor@imm.ox.ac.uk></a> wrote:
</pre>
<blockquote type="cite">
<pre>Hi Eleanor,
Thanks very useful. Is the web site publically available?
</pre>
</blockquote>
<pre>You mean <a moz-do-not-send="true" href="http://idr-demo.openmicroscopy.org/webclient" target="_blank">http://idr-demo.openmicroscopy.org/webclient</a> ?
Cheers,
~Josh
</pre>
<blockquote type="cite">
<pre>Kind regards and thanks,
Steve
</pre>
</blockquote>
<blockquote type="cite">
<pre>From: Eleanor Williams [<a moz-do-not-send="true" href="mailto:exwilliams@dundee.ac.uk" target="_blank">mailto:exwilliams@dundee.ac.uk</a>]
Sent: 07 June 2016 11:09
To: Stephen Taylor <a moz-do-not-send="true" href="mailto:stephen.taylor@imm.ox.ac.uk" target="_blank"><stephen.taylor@imm.ox.ac.uk></a>;
<a moz-do-not-send="true" href="mailto:e.x.williams@dundee.ac.uk" target="_blank">e.x.williams@dundee.ac.uk</a>; <a moz-do-not-send="true" href="mailto:j.a.moore@dundee.ac.uk" target="_blank">j.a.moore@dundee.ac.uk</a>
Subject: Re: Zegami / IDR
Hi Stephen
Here is a link to our workshop presentation but it describes how to
get the data into omero rather than out.
<a moz-do-not-send="true" href="http://downloads.openmicroscopy.org/presentations/2016/Users-Meeting/Workshops/Metadata-at-Scale.pdf" target="_blank">http://downloads.openmicroscopy.org/presentations/2016/Users-Meeting/Workshops/Metadata-at-Scale.pdf</a>
We will be adding the annotation.csv files as attachments to each
screen over the next couple of weeks.
Let us know if you have any more questions.
Best regards
Eleanor
</pre>
</blockquote>
<blockquote type="cite">
<pre>On 07/06/2016 10:41, Stephen Taylor wrote:
Hi Eleanor and Josh,
Great to meet you both at the OME meeting last week.
I'd be interested in trying get some data into Zegami from IDR. I
missed your Unmeeting (ironically I was demoing Zegami) where I think
you went into some of the technical details. Can you send me the link
to your presentation please?
Kind regards and thanks,
Steve
</pre>
</blockquote>
<pre>_______________________________________________
ome-devel mailing list
<a moz-do-not-send="true" href="mailto:ome-devel@lists.openmicroscopy.org.uk" target="_blank">ome-devel@lists.openmicroscopy.org.uk</a>
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</pre>
</blockquote>
<br>
<pre cols="72">--
Eleanor Williams PhD
Data Annotator/Software Engineer
Centre for Gene Regulation and Expression
University of Dundee, UK</pre>
<br>
<span style="font-size:10pt">The University of Dundee
is a registered Scottish Charity, No: SC015096</span>
<br>
<fieldset></fieldset>
<br>
<pre>_______________________________________________
ome-devel mailing list
<a moz-do-not-send="true" href="mailto:ome-devel@lists.openmicroscopy.org.uk" target="_blank">ome-devel@lists.openmicroscopy.org.uk</a>
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</pre>
</blockquote>
<br>
<pre cols="72">--
Damir Sudar - Affiliate Scientist
Lawrence Berkeley Natl Laboratory / MBIB
One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
T: <a moz-do-not-send="true" href="tel:510%2F486-5346" value="+15104865346" target="_blank">510/486-5346</a> - F: <a moz-do-not-send="true" href="tel:510%2F486-5586" value="+15104865586" target="_blank">510/486-5586</a> - E: <a moz-do-not-send="true" href="mailto:DSudar@lbl.gov" target="_blank">DSudar@lbl.gov</a>
<a moz-do-not-send="true" href="http://biosciences.lbl.gov/profiles/damir-sudar-2/" target="_blank">http://biosciences.lbl.gov/profiles/damir-sudar-2/</a>
Visiting Scientist, Oregon Health & Science University</pre>
<br>
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</pre>
</blockquote>
<br>
<pre cols="72">--
Eleanor Williams PhD
Data Annotator/Software Engineer
Centre for Gene Regulation and Expression
University of Dundee, UK</pre>
<br>
<span style="font-size:10pt">The University of Dundee is a
registered Scottish Charity, No: SC015096</span>
<br>
<fieldset></fieldset>
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</pre>
</blockquote>
<br>
<pre cols="72">--
Damir Sudar - Affiliate Scientist
Lawrence Berkeley Natl Laboratory / MBIB
One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
T: <a moz-do-not-send="true" href="tel:510%2F486-5346" value="+15104865346" target="_blank">510/486-5346</a> - F: <a moz-do-not-send="true" href="tel:510%2F486-5586" value="+15104865586" target="_blank">510/486-5586</a> - E: <a moz-do-not-send="true" href="mailto:DSudar@lbl.gov" target="_blank">DSudar@lbl.gov</a>
<a moz-do-not-send="true" href="http://biosciences.lbl.gov/profiles/damir-sudar-2/" target="_blank">http://biosciences.lbl.gov/profiles/damir-sudar-2/</a>
Visiting Scientist, Oregon Health & Science University</pre>
<br>
<span style="font-size:10pt">The University of Dundee is a
registered Scottish Charity, No: SC015096</span>
</div>
<br>
_______________________________________________<br>
ome-devel mailing list<br>
<a moz-do-not-send="true"
href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a><br>
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href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel"
rel="noreferrer" target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><br>
<br>
</blockquote>
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a
registered Scottish Charity, No: SC015096</span>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
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<a class="moz-txt-link-freetext" href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Damir Sudar - Affiliate Scientist
Lawrence Berkeley Natl Laboratory / MBIB
One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
T: 510/486-5346 - F: 510/486-5586 - E: <a class="moz-txt-link-abbreviated" href="mailto:DSudar@lbl.gov">DSudar@lbl.gov</a>
<a class="moz-txt-link-freetext" href="http://biosciences.lbl.gov/profiles/damir-sudar-2/">http://biosciences.lbl.gov/profiles/damir-sudar-2/</a>
Visiting Scientist, Oregon Health & Science University</pre>
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