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Hi Christophe,
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</div>
<div class="">the best way to retrieve all tags in a given context is likely to write a query to</div>
<div class="">retrieve all TagAnnotations (optionally belonging to an user).</div>
<div class=""><br class="">
</div>
<div class="">Python examples of such queries exist in the CLI tag plugin [1] or in the Webclient</div>
<div class="">gateway [2]. From MATLAB you should be able to use IQuery.projection and then</div>
<div class="">unwrap the returned results.</div>
<div class=""><br class="">
</div>
<div class="">>> context = java.util.HashMap;</div>
<div class="">>> context.put(<span class="pl-s"><span class="pl-pds">'</span>omero.group<span class="pl-pds">'</span></span>, java.lang.String(<span class="pl-k">num2str</span>(groupId)));</div>
<div class="">>> tagQuery = ‘select t.id, t.textValue from TagAnnotation t’;</div>
<div class="">>> results = toMatlabList(session.getQueryService.projection(tagQuery, [], context)) </div>
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</div>
<div class="">Best,</div>
<div class="">Sebastien</div>
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</div>
<div class="">[1] <a href="https://github.com/openmicroscopy/openmicroscopy/blob/v5.2.1/components/tools/OmeroPy/src/omero/plugins/tag.py#L253" class="">https://github.com/openmicroscopy/openmicroscopy/blob/v5.2.1/components/tools/OmeroPy/src/omero/plugins/tag.py#L253</a></div>
<div class="">[2] <a href="https://github.com/openmicroscopy/openmicroscopy/blob/v5.2.1/components/tools/OmeroWeb/omeroweb/webclient/webclient_gateway.py#L380" class="">https://github.com/openmicroscopy/openmicroscopy/blob/v5.2.1/components/tools/OmeroWeb/omeroweb/webclient/webclient_gateway.py#L380</a></div>
<div class="">[3] <a href="http://downloads.openmicroscopy.org/omero/5.2.1/api/ome/logic/QueryImpl.html#projection-java.lang.String-ome.parameters.Parameters-" class="">http://downloads.openmicroscopy.org/omero/5.2.1/api/ome/api/IQuery.html#projection-java.lang.String-ome.parameters.Parameters-</a></div>
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<blockquote type="cite" class="">
<div class="">On 7 Jan 2016, at 16:30, Christophe TREFOIS <<a href="mailto:christophe.trefois@uni.lu" class="">christophe.trefois@uni.lu</a>> wrote:</div>
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Hi Will,
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</div>
<div class="">The idea was to get all tags belonging to a user or a group, perhaps even better for a group.</div>
<div class=""><br class="">
</div>
<div class="">It makes sense to get all Tags, since I don’t want duplicate tags for dataset / images and so on. Or what is the reason that these even exist?</div>
<div class=""><br class="">
</div>
<div class="">We inspired ourselves from omero.webtagging source code which uses HQL, but I thought there could be a cleaner way.</div>
<div class=""><br class="">
</div>
<div class="">Thanks,<br class="">
<div class="">
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<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">Dr Christophe Trefois, Dipl.-Ing.</span><span class="Apple-converted-space"> </span><span class="Apple-converted-space"> </span><span style="display: inline;" class=""></span><br class="">
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<blockquote type="cite" class="">
<div class="">On 07 Jan 2016, at 16:46, William Moore <<a href="mailto:will@lifesci.dundee.ac.uk" class="">will@lifesci.dundee.ac.uk</a>> wrote:</div>
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<div class=""><base href="x-msg://88/" class="">
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Hi Michael & Christophe,
<div class=""><br class="">
</div>
<div class=""> I thought Christophe was trying to get ALL tags (not tags on an Image etc).</div>
<div class="">From what I can see, the metadata service gives you tags attached to objects?</div>
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<div class="">Christophe, perhaps you can clarify what criteria you want to load Tags by?</div>
<div class="">Just get ALL tags in the system? Belonging to a particular user? With a particular namespace or value?</div>
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<div class="">  Cheers,</div>
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</div>
<div class="">  Will.</div>
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<div class="">
<div class="">On 7 Jan 2016, at 15:10, "Michael Porter (Staff)" <<a href="mailto:m.porter@dundee.ac.uk" class="">m.porter@dundee.ac.uk</a>> wrote:</div>
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<div lang="EN-GB" link="blue" vlink="purple" style="font-family: Helvetica; font-size: inherit; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); " class="">Hi Christophe<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); " class=""> </span></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); " class="">I’m not 100% sure, since I’ve never used it for this, but if you want to get a tags in a user/system centric way rather than an image-centric way, you need to
 get the metadataService from the session object (<a href="http://www.openmicroscopy.org/site/support/omero5.2/developers/Modules/Api.html" style="color: purple; text-decoration: underline; " class="">http://www.openmicroscopy.org/site/support/omero5.2/developers/Modules/Api.html</a><span class="Apple-converted-space"> </span>)
 . I think from here you can use the loadAnnotations method (<a href="http://downloads.openmicroscopy.org/omero/5.2.1/api/ome/api/IMetadata.html#loadAnnotations-java.lang.Class-java.util.Set-java.util.Set-java.util.Set-ome.parameters.Parameters-" style="color: purple; text-decoration: underline; " class="">http://downloads.openmicroscopy.org/omero/5.2.1/api/ome/api/IMetadata.html#loadAnnotations-java.lang.Class-java.util.Set-java.util.Set-java.util.Set-ome.parameters.Parameters-</a>)<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); " class="">Michael.<o:p class=""></o:p></span></div>
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<b class=""><span lang="EN-US" style="font-size: 11pt; font-family: Calibri, sans-serif; " class="">From:</span></b><span lang="EN-US" style="font-size: 11pt; font-family: Calibri, sans-serif; " class=""><span class="Apple-converted-space"> </span>ome-devel
 [mailto:ome-<a href="mailto:devel-bounces@lists.openmicroscopy.org.uk" style="color: purple; text-decoration: underline; " class="">devel-bounces@lists.openmicroscopy.org.uk</a>]<span class="Apple-converted-space"> </span><b class="">On Behalf Of<span class="Apple-converted-space"> </span></b>Christophe
 TREFOIS<br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>07 January 2016 13:38<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>OME External Developer List <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk" style="color: purple; text-decoration: underline; " class="">ome-devel@lists.openmicroscopy.org.uk</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>[ome-devel] Get list of Tags in Matlab<o:p class=""></o:p></span></div>
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<o:p class=""> </o:p></div>
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Hi all,<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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I have been trying to get a list of all tags using MATLAB and OMERO 5, and I’m sort of struggling.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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I saw that Will posted some code for Python on the mailing a while back, but those functions are not available in Matlab.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Does anybody have any pointers how to do this without looping over all images?<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Kind regards,<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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—<o:p class=""></o:p></div>
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Christophe<o:p class=""></o:p></div>
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<b class=""><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(61, 59, 59); " class="">Dr Christophe Trefois, Dipl.-Ing.</span></b><span class="apple-converted-space"><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(33, 33, 33); " class="">  </span></span><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(33, 33, 33); " class=""><br class="">
</span><span style="font-size: 7.5pt; font-family: Arial, sans-serif; color: rgb(61, 59, 59); " class="">Technical Specialist / Post-Doc</span><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(33, 33, 33); " class=""><o:p class=""></o:p></span></div>
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