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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thank you for the information. Please let me know what are all the standard and useful TAGs for OME-TIFF files. For example,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Height, Width, Horizontal resolution, vertical resolution, camera model, bit depth, compression etc.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Like that for OME-TIFF what are the best/standard TAGs we need to maintain.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thank you,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Ashoka.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> ome-devel [mailto:ome-devel-bounces@lists.openmicroscopy.org.uk]
<b>On Behalf Of </b>William Moore<br>
<b>Sent:</b> Tuesday, 30 June 2015 12:10 AM<br>
<b>To:</b> OME External Developer List<br>
<b>Subject:</b> Re: [ome-devel] Beginners help<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi Ashoka,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">"Resolution" would probably be stored under Image/Pixels.physicalSizeX and Pixels.physicalSizeY.<o:p></o:p></p>
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<p class="MsoNormal">I'm not sure exactly what you mean by "brightness".<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Have a look at the Data Model Overview: <a href="http://www.openmicroscopy.org/site/support/ome-model/developers/model-overview.html">http://www.openmicroscopy.org/site/support/ome-model/developers/model-overview.html</a>, particularly<o:p></o:p></p>
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<p class="MsoNormal">the Image diagram at the top.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The full OME schema can be browsed at <a href="http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/ome.html">http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/ome.html</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">You might find it easier to browse some examples as OME-XML.<o:p></o:p></p>
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<p class="MsoNormal">We have several examples of typical confocal data here: <a href="https://github.com/openmicroscopy/samples">https://github.com/openmicroscopy/samples</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">If you can define what you mean by brightness, or there's any other tags you can't find, we can try to point you in<o:p></o:p></p>
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<p class="MsoNormal">the right direction.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Cheers,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Will.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On 29 Jun 2015, at 06:12, Ashoka Bantumilli <<a href="mailto:AshokaB@optiscan.com">AshokaB@optiscan.com</a>> wrote:<o:p></o:p></p>
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<br>
<o:p></o:p></p>
<p class="MsoNormal">Hi,<br>
<br>
Thank you for the e-mail and information.<br>
<br>
Can you please let me know all the important tags that are useful for OME TIFF files. I.e.: resolution, brightness, etc.<br>
<br>
Thank you,<br>
Ashoka<br>
<br>
-----Original Message-----<br>
From: ome-devel [mailto:ome-<a href="mailto:devel-bounces@lists.openmicroscopy.org.uk">devel-bounces@lists.openmicroscopy.org.uk</a>] On Behalf Of Roger Leigh<br>
Sent: Monday, 15 June 2015 5:38 PM<br>
To: OME External Developer List<br>
Subject: Re: [ome-devel] Beginners help<br>
<br>
On 15/06/2015 04:02, Ashoka Bantumilli wrote:<br>
<br>
<br>
<o:p></o:p></p>
<p class="MsoNormal">I am a C# programmer and would like to start developing with OME-TIFF
<br>
images. I read the material in the OME website but couldn't be able to <br>
start it.<o:p></o:p></p>
<p class="MsoNormal"><br>
Note that C# as a language is not currently supported. We support Java, MATLAB, and more recently C++.<br>
<br>
<br>
<o:p></o:p></p>
<p class="MsoNormal">Here are few questions:<br>
<br>
1)Where can I find OME-TIFF libraries (.dll) and how to integrate with <br>
VS2010/15, .Net 4.5<o:p></o:p></p>
<p class="MsoNormal"><br>
These don't currently exist, I'm afraid.<br>
<br>
We do have a C++ library, but it doesn't yet work on Windows (I'm working on this right now, and it should be in the next point release unless any major difficulties are encountered). This is a C++ rather than a C# API though; unless there's some automatic
means to wrap a C++ API for C#, we won't support C# once the C++ API works on Windows. This looks like a separate and potentially quite large task.<br>
<br>
<br>
<o:p></o:p></p>
<p class="MsoNormal">2)How can I make use of library API to read meta data about OME-TIFF images?<o:p></o:p></p>
<p class="MsoNormal"><br>
As a starting point:<br>
<br>
C++:<br>
<a href="http://www.openmicroscopy.org/site/support/bio-formats5.1/developers/cpp/tutorial.html#metadata">http://www.openmicroscopy.org/site/support/bio-formats5.1/developers/cpp/tutorial.html#metadata</a><br>
and<br>
<a href="http://downloads.openmicroscopy.org/bio-formats-cpp/5.1.2/api/classome_1_1bioformats_1_1FormatReader.html">http://downloads.openmicroscopy.org/bio-formats-cpp/5.1.2/api/classome_1_1bioformats_1_1FormatReader.html</a><br>
Java:<br>
<a href="http://downloads.openmicroscopy.org/bio-formats/5.1.2/api/loci/formats/FormatReader.html">http://downloads.openmicroscopy.org/bio-formats/5.1.2/api/loci/formats/FormatReader.html</a><br>
<br>
<br>
Kind regards,<br>
Roger<br>
<br>
The University of Dundee is a registered Scottish Charity, No: SC015096 _______________________________________________<br>
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