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Hi Niko,
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<div class="">looking at the source code, are you linking the image to a comment annotation or a different</div>
<div class="">type of annotation?</div>
<div class="">At the moment, the `—annotation_link` option in the importer code can only handle comment</div>
<div class="">annotations (and we may have suggested the opposite during the meeting, apologies if that</div>
<div class="">was the case) - see</div>
<div class=""><a href="https://github.com/openmicroscopy/openmicroscopy/blob/v5.1.2/components/blitz/src/ome/formats/importer/cli/CommandLineImporter.java#L843" class="">https://github.com/openmicroscopy/openmicroscopy/blob/v5.1.2/components/blitz/src/ome/formats/importer/cli/CommandLineImporter.java#L843</a></div>
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<div class="">If you want to create a link to a different type of annotation, your best current solution using the</div>
<div class="">current state might be to do the following post-import:</div>
<div class="">1- parse the output of bin/omero import to retrieve the image id - see for instance</div>
<div class=""><a href="https://github.com/sbesson/openmicroscopy/blob/v5.1.2/examples/Training/training_setup.sh#L52" class="">https://github.com/sbesson/openmicroscopy/blob/v5.1.2/examples/Training/training_setup.sh#L52</a></div>
<div class="">2- call bin/omero obj in a separate command to link the image to the know annotation e.g.</div>
<div class="">$ bin/omero obj new ImageAnnotationLink parent=<span class="pl-smi">Image:iid</span> child=<span class="pl-smi">FileAnnotation:fid</span></div>
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<div class="">Best,</div>
<div class="">Sebastien</div>
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<div class="">On 4 Jun 2015, at 21:40, Niko Ehrenfeuchter <<a href="mailto:nikolaus.ehrenfeuchter@unibas.ch" class="">nikolaus.ehrenfeuchter@unibas.ch</a>> wrote:</div>
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Am I doing something wrong?<br class="">
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A quick guess from the road: is the annotation in another group?<br class="">
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I don't think so, as another image in this dataset has the very same annotation - set via the webclient. At least if I remember correctly.
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I'll double check tomorrow, iirc the webclient shows all those properties when hovering with the mouse over an annotation, right?
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Cheers <br class="">
Niko <br class="">
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