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Hi Curtis,

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<div class="">following-up on this thread and the 5.1.2 release announcement [1], the Java</div>

<div class="">training example has been modified as part of the 5.1.2 release [2] and should</div>

<div class="">now provide a concrete example of multi-C, multi-T, multi-Z image upload using</div>

<div class="">the RawPixelsStore service. </div>

<div class="">The corresponding code should be available under GitHub [3].</div>

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<div class="">[1] <a href="http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-May/003315.html" class="">http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-May/003315.html</a></div>

<div class="">[2] <a href="https://github.com/openmicroscopy/openmicroscopy/pull/3826" class="">

https://github.com/openmicroscopy/openmicroscopy/pull/3826</a></div>

<div class="">[3] <a href="https://github.com/openmicroscopy/openmicroscopy/blob/v5.1.2/examples/Training/java/src/training/CreateImage.java#L209" class="">

https://github.com/openmicroscopy/openmicroscopy/blob/v5.1.2/examples/Training/java/src/training/CreateImage.java#L209</a></div>

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<div class="">Thanks again for highlighting this,</div>

<div class="">Sebastien</div>

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<blockquote type="cite" class="">

<div class="">On 15 May 2015, at 10:30, Ian Munro <<a href="mailto:i.munro@imperial.ac.uk" class="">i.munro@imperial.ac.uk</a>> wrote:</div>

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<blockquote type="cite" class="">

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Hi Curtis<br class="">

<br class="">

I don’t know if Matlab code would help.<br class="">

<a href="https://github.com/openmicroscopy/Imperial-FLIMfit/blob/master/FLIMfitFrontEnd/Classes/%40flim_omero_data_manager/fit_results2omeroImage_Channels.m" class="">https://github.com/openmicroscopy/Imperial-FLIMfit/blob/master/FLIMfitFrontEnd/Classes/%40flim_omero_data_manager/fit_results2omeroImage_Channels.m</a><br class="">

<br class="">

I would add tough that this is extremely old code that I’m just in the<br class="">

process of replacing.<br class="">

<br class="">

Ian<br class="">

<br class="">

<br class="">

<br class="">

On 15 May 2015, at 21:20, Curtis Rueden <ctrueden@wisc.edu> wrote:<br class="">

<br class="">

Hi everyone,<br class="">

<br class="">

I am trying to fix a long-standing ImageJ-OMERO bug relating to the<br class="">

upload of multichannel images [1].<br class="">

<br class="">

I thought I had found the obvious problem, but the expected bug-fix<br class="">

[2] does not actually fix it. Instead, it seems to make things worse<br class="">

somehow [3] (upload barfs on the first plane, rather than the second).<br class="">

<br class="">

I was wondering if there are any examples of using the RawPixelsStore<br class="">

service to upload multichannel image data. I saw the<br class="">

RawPixelsStoreTest integration test [4], but it only tests for<br class="">

single-channel data.<br class="">

<br class="">

Relatedly: I am still developing against a dev_5_0 omero_client<br class="">

uber-JAR. I'd be happy to try again with 5.0.8, but only if there is a<br class="">

solid reason to believe it might improve the situation?<br class="">

<br class="">

Thanks,<br class="">

Curtis<br class="">

<br class="">

[1] https://github.com/imagej/imagej-omero/issues/55<br class="">

<br class="">

[2] https://github.com/imagej/imagej-omero/compare/issue-55<br class="">

<br class="">

[3] https://gist.github.com/ctrueden/f960d3d7e67b957d4d9e<br class="">

<br class="">

[4] https://github.com/openmicroscopy/openmicroscopy/blob/v5.1.1/components/tools/OmeroJava/test/integration/RawPixelsStoreTest.java<br class="">

<br class="">

_______________________________________________<br class="">

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ome-devel@lists.openmicroscopy.org.uk<br class="">

http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel<br class="">

<br class="">

<br class="">

<br class="">

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ome-devel@lists.openmicroscopy.org.uk<br class="">

http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel<br class="">

</div>

</blockquote>

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<br class="">

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<br>

<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>

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