<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>Hi Doug-</div>
<div><br>
</div>
<div>Thanks for this— a very interesting development. A few comments:</div>
<div><br>
</div>
<div>1. Re: the various functions and uses you describe, all of this should possible with OMERO and Bio-Formats. Any questions, please use these lists of the OME Forums.</div>
<div><br>
</div>
<div>2. It is obviously important to imagine the various user scenarios for your work. From your brief description, all of these functions should be available in OMERO now, but we continue to develop its capabilities, in part to better serve these types of
scenarios.</div>
<div><br>
</div>
<div>Note that there will be workshops at the upcoming OME Users Meeting on publishing data with OMERO and integrating OMERO’s client tools into other applications. We hope there will be a lot of discussion about what’s available and what more we need to do
in those workshops.</div>
<div><br>
</div>
<div>Thanks again— look forward to seeing SDEO come together.</div>
<div><br>
</div>
<div>Cheers,</div>
<div><br>
</div>
<div>Jason</div>
<div><br>
</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt">
<span style="font-weight:bold">From: </span><Bean>, Douglas <<a href="mailto:douglas.bean@abdn.ac.uk">douglas.bean@abdn.ac.uk</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME Development <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, 22 April 2015 11:11<br>
<span style="font-weight:bold">To: </span>OME Development <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-devel] Scottish Dental Education Online (SDEO) and Educational Virtual Microscopy<br>
</div>
<div><br>
</div>
<div xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<meta name="Generator" content="Microsoft Word 15 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
{font-family:"Cambria Math";
panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:Tahoma;
panose-1:2 11 6 4 3 5 4 4 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0cm;
margin-bottom:.0001pt;
font-size:11.0pt;
font-family:"Calibri",sans-serif;
mso-fareast-language:EN-US;}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:#0563C1;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:#954F72;
text-decoration:underline;}
p.MsoListParagraph, li.MsoListParagraph, div.MsoListParagraph
{mso-style-priority:34;
margin-top:0cm;
margin-right:0cm;
margin-bottom:8.0pt;
margin-left:36.0pt;
mso-add-space:auto;
line-height:106%;
font-size:11.0pt;
font-family:"Calibri",sans-serif;
mso-fareast-language:EN-US;}
p.MsoListParagraphCxSpFirst, li.MsoListParagraphCxSpFirst, div.MsoListParagraphCxSpFirst
{mso-style-priority:34;
mso-style-type:export-only;
margin-top:0cm;
margin-right:0cm;
margin-bottom:0cm;
margin-left:36.0pt;
margin-bottom:.0001pt;
mso-add-space:auto;
line-height:106%;
font-size:11.0pt;
font-family:"Calibri",sans-serif;
mso-fareast-language:EN-US;}
p.MsoListParagraphCxSpMiddle, li.MsoListParagraphCxSpMiddle, div.MsoListParagraphCxSpMiddle
{mso-style-priority:34;
mso-style-type:export-only;
margin-top:0cm;
margin-right:0cm;
margin-bottom:0cm;
margin-left:36.0pt;
margin-bottom:.0001pt;
mso-add-space:auto;
line-height:106%;
font-size:11.0pt;
font-family:"Calibri",sans-serif;
mso-fareast-language:EN-US;}
p.MsoListParagraphCxSpLast, li.MsoListParagraphCxSpLast, div.MsoListParagraphCxSpLast
{mso-style-priority:34;
mso-style-type:export-only;
margin-top:0cm;
margin-right:0cm;
margin-bottom:8.0pt;
margin-left:36.0pt;
mso-add-space:auto;
line-height:106%;
font-size:11.0pt;
font-family:"Calibri",sans-serif;
mso-fareast-language:EN-US;}
span.EmailStyle17
{mso-style-type:personal-compose;
font-family:"Calibri",sans-serif;
color:windowtext;}
.MsoChpDefault
{mso-style-type:export-only;
font-family:"Calibri",sans-serif;
mso-fareast-language:EN-US;}
@page WordSection1
{size:612.0pt 792.0pt;
margin:72.0pt 72.0pt 72.0pt 72.0pt;}
div.WordSection1
{page:WordSection1;}
/* List Definitions */
@list l0
{mso-list-id:633021817;
mso-list-type:hybrid;
mso-list-template-ids:1957601900 134807573 134807577 134807579 134807567 134807577 134807579 134807567 134807577 134807579;}
@list l0:level1
{mso-level-number-format:alpha-upper;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l0:level2
{mso-level-number-format:alpha-lower;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l0:level3
{mso-level-number-format:roman-lower;
mso-level-tab-stop:none;
mso-level-number-position:right;
text-indent:-9.0pt;}
@list l0:level4
{mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l0:level5
{mso-level-number-format:alpha-lower;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l0:level6
{mso-level-number-format:roman-lower;
mso-level-tab-stop:none;
mso-level-number-position:right;
text-indent:-9.0pt;}
@list l0:level7
{mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l0:level8
{mso-level-number-format:alpha-lower;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l0:level9
{mso-level-number-format:roman-lower;
mso-level-tab-stop:none;
mso-level-number-position:right;
text-indent:-9.0pt;}
@list l1
{mso-list-id:1852990664;
mso-list-type:hybrid;
mso-list-template-ids:504406470 134807567 134807577 134807579 134807567 134807577 134807579 134807567 134807577 134807579;}
@list l1:level1
{mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l1:level2
{mso-level-number-format:alpha-lower;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l1:level3
{mso-level-number-format:roman-lower;
mso-level-tab-stop:none;
mso-level-number-position:right;
text-indent:-9.0pt;}
@list l1:level4
{mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l1:level5
{mso-level-number-format:alpha-lower;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l1:level6
{mso-level-number-format:roman-lower;
mso-level-tab-stop:none;
mso-level-number-position:right;
text-indent:-9.0pt;}
@list l1:level7
{mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l1:level8
{mso-level-number-format:alpha-lower;
mso-level-tab-stop:none;
mso-level-number-position:left;
text-indent:-18.0pt;}
@list l1:level9
{mso-level-number-format:roman-lower;
mso-level-tab-stop:none;
mso-level-number-position:right;
text-indent:-9.0pt;}
ol
{margin-bottom:0cm;}
ul
{margin-bottom:0cm;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]-->
<div lang="EN-GB" link="#0563C1" vlink="#954F72">
<div class="WordSection1">
<p class="MsoNormal">Hi OME team,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">The following is a rough plan based on our meeting before Christmas (Ola, Gus, Jason, Carlos and me) about virtual microscopy for education for Scottish universities.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Our ultimate aim is to make educational virtual microscopy (EVM) available for teaching and learning across all Scottish universities. As this would be a rather large undertaking, I suggest for the time being to focus on integrating EVM
into SDEO (Scottish Dental Education Online) e-learning resources and move on from there once established.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">As I understand it, the steps we need to achieve this would be as follows;<o:p></o:p></p>
<p class="MsoListParagraphCxSpFirst" style="text-indent:-18.0pt;mso-list:l1 level1 lfo1">
<!--[if !supportLists]--><span style="mso-list:Ignore">1.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->Upload some slides (files) to the server space earmarked for SDEO. Assuming I’m correct about that space being available.<o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="text-indent:-18.0pt;mso-list:l1 level1 lfo1">
<!--[if !supportLists]--><span style="mso-list:Ignore">2.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->Import the existing annotations / ROIs for these slides. I’m guessing this will be on OME systems too, at least for the time being.
<o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="text-indent:-18.0pt;mso-list:l1 level1 lfo1">
<!--[if !supportLists]--><span style="mso-list:Ignore">3.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->OME will supply some Javascript that will allow me to embed EVM into a webpage and display the content from stages 1 and 2. I will see if I can integrate this into our e-learning to create the activities we need. This should satisfy
user story C, below.<o:p></o:p></p>
<p class="MsoListParagraphCxSpLast" style="text-indent:-18.0pt;mso-list:l1 level1 lfo1">
<!--[if !supportLists]--><span style="mso-list:Ignore">4.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]--><span style="color:black">Create account request page (similar solution like Dundee Demo server) for lecturers registered with SDEO. This still needs some finely grained definition I think, but would be a start on user story B.</span><o:p></o:p></p>
<p class="MsoNormal">Once we’ve done this it would probably be a good idea to discuss what we’ve got and how we move forward etc.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I see there being a few user stories / use cases;<o:p></o:p></p>
<p class="MsoListParagraphCxSpFirst" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<!--[if !supportLists]--><span style="mso-list:Ignore">A.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->A lecturer (from any given institution) can present slides during their lecture.<o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<!--[if !supportLists]--><span style="mso-list:Ignore">B.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->A lecturer (from any given institution) can annotate slides with their own ROIs.<o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<!--[if !supportLists]--><span style="mso-list:Ignore">C.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->A student can use EVM in directed study (e-learning).<o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<!--[if !supportLists]--><span style="mso-list:Ignore">D.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->A student can use EVM in directed study (lecture materials).<o:p></o:p></p>
<p class="MsoListParagraphCxSpLast" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<!--[if !supportLists]--><span style="mso-list:Ignore">E.<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span><!--[endif]-->A student can use EVM in undirected study, browsing the catalogue.<o:p></o:p></p>
<p class="MsoNormal">Please add / comment / suggest alterations.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Regards<o:p></o:p></p>
<p class="MsoNormal">Doug<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b><span style="color:#4F6228;mso-fareast-language:EN-GB">Douglas Bean</span></b><span style="color:#4F6228;mso-fareast-language:EN-GB"></span><span style="font-size:9.0pt;color:#4F6228;mso-fareast-language:EN-GB">MSc</span><span style="color:#4F6228;mso-fareast-language:EN-GB">
| Software Developer | SDEO.ac.uk<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:8.0pt;color:#4F6228;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size: 10pt; font-family: Tahoma, sans-serif; color: rgb(79, 98, 40);">Mon - Wed</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);"> - Medi-CAL Unit</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);">
|</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);"> Room 0.036
</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);">|</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);"> Polwarth Building</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);">
|</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);"> University of Aberdeen
</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);">|
</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);">Foresterhill</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);"> |
</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);">Aberdeen</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);"> |
</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);">AB25 2ZD<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);">Tel (direct): +44 (0)1224 43-7033</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(31, 73, 125);"> |</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: rgb(127, 127, 127);">
Tel (unit): +44 (0)1224 43-7032</span><span style="color:#1F497D;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: gray;"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size: 10pt; font-family: Tahoma, sans-serif; color: rgb(79, 98, 40);">Thurs - Fri</span><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: gray;"> – University of Aberdeen Dental School | Argyll House
| Aberdeen | AB25 2ZR<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size: 8pt; font-family: Tahoma, sans-serif; color: gray;">Tel +44 (0)1224 5 59608<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<br>
<br>
The University of Aberdeen is a charity registered in Scotland, No SC013683.<br>
Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba, Àir. SC013683.
</div>
</div>
</span><br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>