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I assumed it’s in KB. So I changed it locally but it still throws the error.
<div class=""><br class="">
</div>
<div class="">I just put ice.config in my working directory and use the normal loadOmero(om_host) to load the config.</div>
<div class=""><br class="">
</div>
<div class="">Since I still get the error, I assume I have to set it on the server?</div>
<div class=""><br class="">
</div>
<div class="">Is my image too big?</div>
<div class=""><br class="">
</div>
<div class="">Thanks,<br class="">
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<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">Dr Christophe Trefois, Dipl.-Ing.</span>
<span style="display: inline;" class=""></span><br class="">
<span style="color: rgb(61, 59, 59); display: inline; font-size:7.5pt;" class="">Technical Specialist / Post-Doc</span>
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<div class="">On 09 Feb 2015, at 14:47, Christophe TREFOIS <<a href="mailto:christophe.trefois@uni.lu" class="">christophe.trefois@uni.lu</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Hi Sébastien,
<div class=""><br class="">
</div>
<div class="">What is the unit?</div>
<div class=""><br class="">
</div>
<div class="">And, what’s the default on the server side?</div>
<div class=""><br class="">
</div>
<div class="">Thank you for your help,</div>
<div class=""><br class="">
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<p style="font-family: Arial, sans-serif; font-size: 10pt; line-height: 16px; color: rgb(33, 33, 33);" class="">
<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">Dr Christophe Trefois, Dipl.-Ing.</span>
<span style="display: inline;" class=""></span><br class="">
<span style="color: rgb(61, 59, 59); display: inline; font-size:7.5pt;" class="">Technical Specialist / Post-Doc</span>
</p>
<p style="font-family: Arial, sans-serif; font-size: 7.5pt; line-height: 16px;" class="">
<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">UNIVERSITÉ DU LUXEMBOURG</span><br class="">
<span style="display: inline;" class=""><br class="">
</span><span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">LUXEMBOURG CENTRE FOR SYSTEMS BIOMEIDINCE</span><br class="">
<span style="color: rgb(61, 59, 59); display: inline;" class="">Campus Belval | House of Biomedicine
<br class="">
7, avenue des Hauts-Fourneaux <br class="">
L-4362 Esch-sur-Alzette </span><br class="">
<span style="color: rgb(61, 59, 59); display: inline;" class="">T: </span><span style="color: rgb(61, 59, 59); display: inline;" class="">+352 46 66 44 6124</span>
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<span style="color: rgb(61, 59, 59); display: inline;" class="">F: </span><span style="color: rgb(61, 59, 59); display: inline;" class="">+352 46 66 44 6949</span>
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<blockquote type="cite" class="">
<div class="">On 09 Feb 2015, at 12:31, Sebastien Besson (Staff) <<a href="mailto:s.besson@dundee.ac.uk" class="">s.besson@dundee.ac.uk</a>> wrote:</div>
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The University of Dundee is a registered Scottish Charity, No: SC015096<br class="">
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<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">From:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">"Sebastien Besson (Staff)" <<a href="mailto:s.besson@dundee.ac.uk" class="">s.besson@dundee.ac.uk</a>><br class="">
</span></div>
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<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">To:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">OME-devel OME <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk" class="">ome-devel@lists.openmicroscopy.org.uk</a>><br class="">
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<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Subject:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><b class="">Re: [ome-devel] Hypercube out of memory</b><br class="">
</span></div>
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<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Date:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">9 Feb 2015 12:31:46 CET<br class="">
</span></div>
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<br class="">
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Hi Christophe,
<div class=""><br class="">
</div>
<div class="">you should be abele to set any value for MessageSizeMax via an ice.config file.</div>
<div class=""><br class="">
</div>
<div class="">See the corresponding line in the ice.config file included in the OMERO.matlab:</div>
<div class=""><a href="https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.7/etc/ice.config#L123" class="">https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.7/etc/ice.config#L123</a></div>
<div class=""><br class="">
</div>
<div class="">Let us know if this does not work,</div>
<div class="">Sebastien</div>
<div class=""><br class="">
<div class="">
<div class="">On 9 Feb 2015, at 11:14, Christophe TREFOIS <<a href="mailto:christophe.trefois@uni.lu" class="">christophe.trefois@uni.lu</a>> wrote:</div>
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Dear all,
<div class=""><br class="">
</div>
<div class="">I tried the example in the OMERO Matlab doc to load a hypercube from a 1GB tiff file</div>
<div class=""><br class="">
</div>
<div class="">I used the following tutorial: <a href="http://www.openmicroscopy.org/site/support/omero5/developers/Matlab.html" class="">http://www.openmicroscopy.org/site/support/omero5/developers/Matlab.html</a></div>
<div class=""><br class="">
</div>
<div class="">I get the following error when trying to “getHypercube”</div>
<div class=""><br class="">
</div>
<div class="">
<div class="">Java exception occurred:</div>
<div class="">Ice.UnknownLocalException</div>
<div class=""> unknown = "Ice::MemoryLimitException</div>
<div class=""> Ice.MemoryLimitException</div>
<div class=""> reason = "requested 1424673822 bytes, maximum allowed is 67108864 bytes (see Ice.MessageSizeMax)”</div>
<div class=""><br class="">
</div>
<div class="">Is it possible to increase the MessageSizeMax or is it not advised and if so, how could I load my hypercube into Matlab anyway?</div>
<div class=""><br class="">
</div>
<div class="">Best,</div>
<div class="">
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<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">Dr Christophe Trefois, Dipl.-Ing.</span>
<span style="display: inline;" class=""></span><br class="">
<span style="color: rgb(61, 59, 59); display: inline; font-size:7.5pt;" class="">Technical Specialist / Post-Doc</span>
</p>
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</span><span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">LUXEMBOURG CENTRE FOR SYSTEMS BIOMEIDINCE</span><br class="">
<span style="color: rgb(61, 59, 59); display: inline;" class="">Campus Belval | House of Biomedicine
<br class="">
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L-4362 Esch-sur-Alzette </span><br class="">
<span style="color: rgb(61, 59, 59); display: inline;" class="">T: </span><span style="color: rgb(61, 59, 59); display: inline;" class="">+352 46 66 44 6124</span>
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<div class="">Dr Sébastien Besson</div>
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<div class="">Wellcome Trust Centre for Gene Regulation and Expression,</div>
<div class="">College of Life Sciences, University of Dundee, Dow Street,</div>
<div class="">Dundee DD1 5EH Scotland UK Tel: (01382) 386364</div>
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