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<div class="moz-cite-prefix">Hi all,<br>
<br>
I'm also working on the same thing, been eyeing it for a while but
started seriously last week. Here's my current progress:<br>
<br>
<a class="moz-txt-link-freetext" href="https://github.com/hajaalin/fig-omero">https://github.com/hajaalin/fig-omero</a><br>
<br>
I managed to split everything in separate containers and start the
whole show with Fig. And I like the way to pass secrets, using
ejson made by Shopify. The database part now starts from a pg_dump
made in OMERO 4.4. Just today I got LDAP working.<br>
<br>
My goal is to take this into production use, I think it'd make
updates easier later on.<br>
<br>
Please have a look and let me know what you think, it'd be great
to have the setup verified by more people :) <br>
<br>
Best,<br>
Harri<br>
<br>
On 15/01/15 16:01, Simon Li wrote:<br>
</div>
<blockquote
cite="mid:CAMvbRBH2uRK1nQOHgZGUPx0AmiSGzCLebKtZG1fQWZXYvsXN=g@mail.gmail.com"
type="cite">
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<div>Hi Hadrien<br>
<br>
</div>
Thanks for your continued interest in this. We're still very
much at the investigative stage regarding how we're going to use
Docker, and due to other priorities not much has changed since
your last email. More answers in line...<br>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 15 January 2015 at 11:08, Hadrien
Mary <span dir="ltr">
<<a moz-do-not-send="true"
href="mailto:hadrien.mary@gmail.com" target="_blank">hadrien.mary@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
Hi guys,<br>
<br>
I created a Dockerfile some weeks ago :<br>
<a moz-do-not-send="true"
href="https://github.com/hadim/docker-omero"
target="_blank">https://github.com/hadim/docker-omero</a>.
The main purpose was to both<br>
learn how to install OME and get some training with
docker.<br>
<br>
I am planning to install an OME server for our lab and I
am not<br>
satisfied with my Dockerfile since it's pretty limited and
use only<br>
one instance for everything (no separated database
instance).<br>
<br>
I noticed it exists two repositories which seem to be
official and<br>
used there : <a moz-do-not-send="true"
href="https://github.com/ome/docker" target="_blank">https://github.com/ome/docker</a>
and<br>
<a moz-do-not-send="true"
href="https://github.com/omedocker/omedocker"
target="_blank">https://github.com/omedocker/omedocker</a>.
I'd like to test these<br>
dockerfiles to see if it can fit for production in my
case.<br>
<br>
My questions are:<br>
<br>
- for what purpose are you using docker (testing,
production, ci...) ?<br>
</blockquote>
<div><br>
</div>
<div>Initially CI/testing, especially with different
versions of dependencies and configurations, if this goes
well then potentially production too.<br>
</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
- what is the difference between both repos ?<br>
</blockquote>
<div><br>
omedocker was the original repo designed to work with
Docker Hub (automated builds), from what I remember we
couldn't use an organisation repo because Docker Hub
wanted privileged access to our GitHub account instead of
just a single repository (this may have changed in the
intervening time).<br>
<br>
</div>
<div>It was forked into ome/docker so that it would fit in
to our normal workflow with multiple OME team members
having commit access, and being able to open
pull-requests.<br>
<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
- which one should I use ?<br>
</blockquote>
<div><br>
</div>
<div>Probably ome/docker which is effectively our
development repo, once our infrastructure is fully setup
the tentative plan is to push releases to omedocker to be
automatically built by Docker Hub.<br>
</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
- does a more complete documentation exist about how to
use these<br>
dockerfiles (currently I am reading Makefile as a
documentation) ?<br>
</blockquote>
<div><br>
</div>
<div>As I mentioned earlier everything is still very much at
an exploratory stage. Once everything is stable it'll be
fully documented. If you want to build everything in
ome/docker you can run something like:<br>
<br>
for docker in $(python graph.py --order)<br>
do<br>
docker=$(echo $docker | cut -d: -f1)<br>
cd $docker<br>
failed=0<br>
docker build -t openmicroscopy/$docker<br>
cd ..<br>
done<br>
<br>
</div>
<div>graph.py outputs out the dependencies between images.
Alternatively if you just want to build one image it
should be easy to figure out the dependencies for yourself
by checking the Dockerfile FROM lines.<br>
</div>
<div><br>
</div>
<div>There's a lot of stuff in the repo at the moment, some
directly related to OMERO, others related to our
infrastructure. E.g. omero-in-a-box is an all-in-one
image, omero-grid was an early attempt at setting up
different OMERO components on separate images.<br>
<br>
</div>
<div>If there's anything else you need to know just ask!<br>
<br>
Best wishes<br>
<br>
Simon<br>
</div>
<div><br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
Thanks !<br>
<br>
--<br>
Hadrien Mary<br>
<br>
Ph.D student in Biology<br>
Tournier-Gachet Team<br>
CNRS - LBCMCP - UMR 5088<br>
<br>
Université de Toulouse - Bât. 4R3B1<br>
118, route de Narbonne - 31062 Toulouse<br>
_______________________________________________<br>
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href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a><br>
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href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel"
target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><br>
<br>
The University of Dundee is a registered Scottish Charity,
No: SC015096<br>
</blockquote>
</div>
<br>
</div>
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a
registered Scottish Charity, No: SC015096</span>
<br>
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