<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">
Hi Gary,
<div><br>
<div>
<div>On 3 Nov 2014, at 21:00, Yellen, Gary <<a href="mailto:gary_yellen@hms.harvard.edu">gary_yellen@hms.harvard.edu</a>> wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Hi Sebastian,<o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">I’m happy to share the code. My thought was that the OMETiffWriter_gy class (only has my initials because OMETiffWriter is such a general name) should actually be generally
usable code, even though the other m file is more specific. I’m sure it would only cover a subset of applications, of course.<o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
</div>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>We will be opening a Pull Request to add a link to this thread and the code in the Bio-Formats documentation.</div>
<br>
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><span style="color: rgb(31, 73, 125); font-family: Calibri, sans-serif; font-size: 11pt;">I like your idea of providing a more simple interface through the helper
methods. </span></div>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>Improving this aspect of Bio-Formats is certainly something under investigation. The most likely placeholder</div>
<div>for such additions will be a priori a Java service like the OMEXMLService interface.</div>
<br>
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">The reason I implemented my methods as part of a class object is because it can retain persistent state information about (e.g.) the next available annotation IDs in specific
types. </span></div>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>That makes sense, the index of the next available annotation is also readable using the getxxxAnnotationCount() getter methods. See</div>
<div>for instance <a href="https://downloads.openmicroscopy.org/bio-formats/5.0.5/api/ome/xml/meta/OMEXMLMetadataImpl.html#getTagAnnotationCount()">
https://downloads.openmicroscopy.org/bio-formats/5.0.5/api/ome/xml/meta/OMEXMLMetadataImpl.html#getTagAnnotationCount()</a></div>
<div>While using them, please note these methods can throw a null pointer exception e.g. if no annotation has been added.</div>
<div><br>
</div>
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">I find it useful to have the annotation IDs specify the type (e.g. Annotation:C0, Annotation:D3), as this makes de-referencing them much easier when the file is read back.</span></div>
</div>
</div>
</blockquote>
<div><br>
</div>
All noted. If we implement helper methods, this could likely be supported via a prefix argument.</div>
<div><br>
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"><o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">I also meant to ask: some of the setXxxxAnnotationRef methods require an annotation index as well as the ID, but I’m not sure why this is necessary, as the ID seems to
be a unique identifier.</span></div>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>Taking <a href="https://downloads.openmicroscopy.org/bio-formats/5.0.5/api/ome/xml/meta/OMEXMLMetadataImpl.html#setImageAnnotationRef(java.lang.String,%20int,%20int)">
https://downloads.openmicroscopy.org/bio-formats/5.0.5/api/ome/xml/meta/OMEXMLMetadataImpl.html#setImageAnnotationRef(java.lang.String,%20int,%20int)</a></div>
<div>as an example. </div>
<div>- String annotation corresponds to the ID of the annotation to be referenced in the Image, e.g. `Annotation:0`</div>
<div>- annotationRefIndex is the index of the annotation reference for the image. This index is a priori independent of the index of the referenced</div>
<div> annotation. This is the same index that is used while retrieving a given annotation reference for an image with e.g.</div>
<div> <a href="https://downloads.openmicroscopy.org/bio-formats/5.0.5/api/ome/xml/meta/MetadataRetrieve.html#getImageAnnotationRef(int,%20int)">
https://downloads.openmicroscopy.org/bio-formats/5.0.5/api/ome/xml/meta/MetadataRetrieve.html#getImageAnnotationRef(int,%20int)</a></div>
<div><br>
</div>
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"><o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><span style="color: rgb(31, 73, 125); font-family: Calibri, sans-serif; font-size: 11pt;">I am happy with my current hybrid solution – it seems to work quite efficiently.
I have also created an OMETiffReader_gy class for reading back the series efficiently into MATLAB objects (and also reading back the metadata into a MATLAB structure). I have also subclassed both the reader and the writer objects to provide functions more
specific to my own application (such as combining read metadata and image data back into a data object). I think that the general superclass and specific subclass might be a good approach for MATLAB users who want to read and write OME-TIFFs from their own
applications.</span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">I’m sure you will still want to investigate the Bio-Formats performance, but there is no rush for my own purposes.</span></div>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>All noted and understood. We will keep you posted on performance issues.</div>
<div><br>
</div>
<div>Best,</div>
Sebastien</div>
<div><br>
<blockquote type="cite">
<div lang="EN-US" link="blue" vlink="purple" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div class="WordSection1" style="page: WordSection1;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"><o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Best regards,<o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Gary<o:p></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div>
<div>
<div style="border-style: solid none none; border-top-color: rgb(181, 196, 223); border-top-width: 1pt; padding: 3pt 0in 0in;">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;">From:</span></b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;"><span class="Apple-converted-space"> </span>Sebastien Besson [<a href="mailto:s.besson@dundee.ac.uk">mailto:s.besson@dundee.ac.uk</a>]<span class="Apple-converted-space"> </span><br>
<b>Sent:</b><span class="Apple-converted-space"> </span>Monday, November 03, 2014 10:15 AM<br>
<b>To:</b><span class="Apple-converted-space"> </span>Yellen, Gary<br>
<b>Cc:</b><span class="Apple-converted-space"> </span>OME-devel OME; Copeland, Jay Arnold Jesse<br>
<b>Subject:</b><span class="Apple-converted-space"> </span>Re: [ome-devel] MATLAB Class for fast and simple writing of OME-TIFFs<o:p></o:p></span></div>
</div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
Hi Gary,<o:p></o:p></div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
thank you very much for your email. <o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
Regarding the code itself, I had a quick glance at it and did not see any obvious issue so far. Obviously part of it is<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
quite specific to your application but there are many methods useful for the community and it is really nice to see<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
concrete examples of usage.<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
A couple of immediate thoughts:<o:p></o:p></div>
</div>
<div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
- are you happy with your current hybrid solution? The performance issue arising with Bio-Formats only calls is<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
certainly something we want to investigate but this will require a bit of time. Having access to the code allows us<o:p></o:p></div>
</div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
to schedule this in our agenda thought.<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
- I am considering porting back some of this code back to the open-source code. In particular the mechanisms<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
for creating and linking annotations to images could likely be simplified for others by adding helper methods, e.g.<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
something like:<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
>> tagID = createTagAnnotation(metadata, value); <o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
>> linkImageAnnotation(metadata, imageIndex, tagID); <o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
Would that be acceptable for you and if so do you have any comments/suggestions?<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
Thanks again for sharing your code,<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
Sebastien<o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
<div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
On 31 Oct 2014, at 21:09, Yellen, Gary <<a href="mailto:gary_yellen@hms.harvard.edu" style="color: purple; text-decoration: underline;">gary_yellen@hms.harvard.edu</a>> wrote:<o:p></o:p></div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<br>
<br>
<o:p></o:p></div>
<div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Hi all –</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Here is some code for exporting OME-TIFFs from MATLAB data, using a combination of Bio-Formats calls for the metadata and MATLAB Tiff calls for the actual file writing.
I have found the speed to be significantly faster than using all Bio-Formats calls.</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">I’ve also included tools (hopefully general!) for adding all different types of annotations to the images, without wrestling with the many Java calls necessary to do this.</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">The main code is the OMETiffWriter_gy class, in a single file. There’s documentation of the workflow at the top of the code. I’ve also included example code in the dF_saveAsOMETiff.m
file, which is just for your perusal since it requires object classes that are peculiar to our lab.</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Please let me know if you find bugs in the OMETiffWriter_gy code, or if you make improvements.</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"><br>
Best,</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Gary</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span lang="DE" style="font-size: 8pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span lang="DE" style="font-size: 8pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Gary Yellen, PhD :: Professor of Neurobiology</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span lang="DE" style="font-size: 8pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Harvard Medical School :: 220 Longwood Ave [WAB 328] :: Boston, MA 02115</span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span lang="DE" style="font-size: 8pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">617-432-0137 :: <a href="mailto:gary_yellen@hms.harvard.edu" style="color: purple; text-decoration: underline;"><span style="color: purple;">gary_yellen@hms.harvard.edu</span></a></span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span><o:p></o:p></div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-size: 9pt; font-family: Helvetica, sans-serif;"><OMETiffWriter_gy.m><dF_saveAsOMETiff.m><o:p></o:p></span></div>
</div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
<div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-family: Helvetica, sans-serif;">Dr Sébastien Besson<o:p></o:p></span></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-family: Helvetica, sans-serif;">Open Microscopy Environment / Harvard Medical School<o:p></o:p></span></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-family: Helvetica, sans-serif;">Wellcome Trust Centre for Gene Regulation and Expression,<o:p></o:p></span></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-family: Helvetica, sans-serif;">College of Life Sciences, University of Dundee, Dow Street,<o:p></o:p></span></div>
</div>
<div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<span style="font-family: Helvetica, sans-serif;">Dundee DD1 5EH Scotland UK Tel: (01382) 386364<o:p></o:p></span></div>
</div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<o:p> </o:p></div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">
<br>
<span style="font-size: 10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span></div>
</div>
</div>
</blockquote>
</div>
<br>
<div><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px;"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">
<div>Dr Sébastien Besson</div>
<div>Open Microscopy Environment / Harvard Medical School</div>
<div>Wellcome Trust Centre for Gene Regulation and Expression,</div>
<div>College of Life Sciences, University of Dundee, Dow Street,</div>
<div>Dundee DD1 5EH Scotland UK Tel: (01382) 386364</div>
</div>
</span></div>
</span></span></div>
<br>
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>