<div dir="ltr"><div><div>Josh,<br><br></div>I have solved the problem by redirecting the OMERO tmp folder to a larger partition. It was the hard drive space limitation causing the problem.<br><br></div><div>On the other hand, I have found that Blitz-0.log files can get really big along with Blitz-0.log.1, Blitz-0.log.2... files. Is there a way to control the size and life time for Blitz log files? Otherwise I would have to create a cron job to clean up Blitz log files periodically.<br><br></div><div>Many thanks,<br><br></div>Yanling<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Sep 9, 2014 at 5:14 AM, Josh Moore <span dir="ltr"><<a href="mailto:josh@glencoesoftware.com" target="_blank">josh@glencoesoftware.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><br>
On Sep 8, 2014, at 7:30 PM, Yanling Liu wrote:<br>
<br>
> Hello,<br>
<br>
Hi Yanling,<br>
<span class=""><br>
> Tried to do batch image export over a 76 images dataset but failed.<br>
><br>
> As shown in the attached images.tif file, the processing seems to be<br>
> interrupted as output log message got truncated. It failed at 5963P_04.tif<br>
> and there's around 20 images remain unprocessed.<br>
<br>
</span>Do you still have the Blitz-0.log and the Processor-0.log for that event? var/log/master.out and var/log/master.err may also be useful in case the Python process is crashing.<br>
<span class=""><br>
> Could this a memory issue? Any hint to modify ome configuration to increase<br>
> useable memory for batch export?<br>
<br>
</span>It really depends on which service is having issues. The documentation for bumping memory is available at:<br>
<br>
<a href="https://www.openmicroscopy.org/site/support/omero5/sysadmins/server-performance.html#jvm-memory-settings" target="_blank">https://www.openmicroscopy.org/site/support/omero5/sysadmins/server-performance.html#jvm-memory-settings</a><br>
<br>
But you might be able to wait until we pinpoint the error.<br>
<span class=""><br>
> In the attached batch_image_export.tiff file, the failed batch export task<br>
> is shown as green check mark and a previous batch export task with smaller<br>
> number of images was success.<br>
><br>
> Thanks,<br>
> Yanling<br>
<br>
<br>
</span>Cheers,<br>
~Josh.</blockquote></div><br></div>