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<div>Dear All-</div>
<div><br>
</div>
<div>Thanks very much to many of you who have responded to this email— your feedback has been great, and quite inspiring for the team. </div>
<div><br>
</div>
<div>As noted below, we welcome comments on the project, suggestions for future directions, and any critiques on our work or approach.</div>
<div><br>
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<div>A few have asked for some idea of where we are going. Here’s our current proposed Aims & Outcomes;</div>
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<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt"><span lang="EN-US">In the next period of its activities, OME will:<o:p></o:p></span></p>
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<!--[if !supportLists]--><span lang="EN-US" style=""><span style="mso-list:Ignore">·<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span></span><!--[endif]--><span lang="EN-US">support new imaging modalities, expressing them in its underlying Data Model, and then building software tools that support reading, viewing, and analyzing these new data;
<o:p></o:p></span></p>
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<!--[if !supportLists]--><span lang="EN-US" style=""><span style="mso-list:Ignore">·<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span></span><!--[endif]--><span lang="EN-US">adopt emerging technologies for client application development that allow a single framework to be used in web, Java, and native client applications;<o:p></o:p></span></p>
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<!--[if !supportLists]--><span lang="EN-US" style=""><span style="mso-list:Ignore">·<span style="font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';">
</span></span></span><!--[endif]--><span lang="EN-US">integrate new tools for 2D and 3D morphometry, for analysis of data from 3D cell models, tissues and embryos imaged with light sheet microscopes (LSFM), optical projection tomography (OPT), microCT (µ</span><span lang="EN-US">CT),
high resolution episcopic microscopy (HREM) and other emerging methods;<o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">continue to enable and energise the development of new applications for processing and mining image and non-image data;<span style="mso-spacerun:yes">
</span><o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">develop tools for systematic annotation and linkage of images, regions and analytic results derived from multi-dimensional images,<o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">expand capabilities for publishing and sharing all the types of data supported by OME’s tools.<o:p></o:p></span></p>
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<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt"><span lang="EN-US">The outcomes of this work will be:
<o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">application of OME-TIFF, Bio-Formats, and OMERO into an expanding set of imaging domains and scientific disciplines;<o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">the availability and use of improved analytic and processing tools for large, multi-dimensional image experiments that probe molecular function and interaction and that reveal the structure and dynamics
of tissues, organs and embryos and in particular, the movement and migration of cells in 3D matrices;<o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">the means to link images recorded at different scales or with different imaging modalities<o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">the ability to link, share and mine datasets from imaging and non-imaging modalities;<o:p></o:p></span></p>
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identifiers, enabling full search and mining of the stored datasets; <o:p></o:p></span></p>
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</span></span></span><!--[endif]--><span lang="EN-US">routine sharing and publication of multi-dimensional image data by labs, institutions, and international repositories.<span style="mso-spacerun:yes">
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<div>All comments, suggestions, and critiques welcome. As always, thanks for your support.</div>
<div><br>
</div>
<div>Cheers,</div>
<div><br>
</div>
<div>Jason</div>
<div><br>
</div>
<div><br>
</div>
<div>On 03/06/2014 18:22, "Jason Swedlow" <<a href="mailto:j.r.swedlow@dundee.ac.uk">j.r.swedlow@dundee.ac.uk</a>> wrote:</div>
<div><br>
</div>
<blockquote id="MAC_OUTLOOK_ATTRIBUTION_BLOCKQUOTE" style="BORDER-LEFT: #b5c4df 5 solid; PADDING:0 0 0 5; MARGIN:0 0 0 5;">
<div>Dear All</div>
<div><br>
</div>
<div>As Helen mentioned, it's time for our annual trek to Paris, for the highlight of our year, the OME Annual Users Meeting. We're excited to present what we've been doing and most importantly, hear ideas for future priorities and work. We'll post regular
updates and the presentations, as always.</div>
<div><br>
</div>
<div>However, it's also time for another regular rite-- the funding of OME's next steps. As many of you know, OME is funded by a combination of funding from the Wellcome Trust and the BBSRC. Our main funding comes from a Wellcome Trust Strategic Award, which
runs through the end of 2014. We are now applying for another Strategic Award, which we have proposed to be funded by the Wellcome Trust and the BBSRC. We're proposing the funding run through 2017.</div>
<div><br>
</div>
<div>A critical part of this application is feedback from the community-- what you like, what you don't, and what you think we should do.</div>
<div><br>
</div>
<div>So, we'd ask you to send your thoughts, suggestions and ideas by email to me privately, or this list-- whichever you prefer. Tell us how you use OME's tools, how you see the project's work, and anything in particular you think we should be doing in the
future. Obviously, we have our own ideas, but in this exercise, we want to hear yours. Finally, if you could change one thing about OME, what would it be?</div>
<div><br>
</div>
<div>Please send feedback through the month of June. Thanks in advance for your comments and ideas.</div>
<div><br>
</div>
<div>Cheers,</div>
<div><br>
</div>
<div>Jason</div>
<div><br>
</div>
<div>Centre for Gene Regulation & Expression | Open Microscopy Environment | University of Dundee</div>
<div><br>
</div>
<div>The University of Dundee is a registered Scottish Charity, No: SC015096</div>
<div>_______________________________________________</div>
<div>ome-devel mailing list</div>
<div><a href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a></div>
<div><a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a></div>
<div><br>
</div>
</blockquote>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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