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<div>Dear Yuriy,</div>
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<div>We are glad that the integration workshop was useful for you and your team.</div>
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<div>All the codes required for your workflow are present on github,</div>
<div><a href="https://gist.github.com/bramalingam/1d36f827add8f5342068">https://gist.github.com/bramalingam/1d36f827add8f5342068</a></div>
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<div>The work shop was basically a proof of concept, and the code on github is no where near to being a release candidate.</div>
<div>So any comments/feedback from the user community via either the mailing-lists or the forums, would be very valuable at our end. </div>
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<div>*Sunil and Doug might have to play around a little to get things going.</div>
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<div>A gist : </div>
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<div>1) Omero matlab toolbox comes with a libs folder , which carries the required jars for omero. Please add the following jars to it as well,</div>
<div><span class="Apple-tab-span" style="white-space: pre;"></span>- bioformats_package.jar</div>
<div><span class="Apple-tab-span" style="white-space: pre;"></span>- ini4j.jar</div>
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<div>2) You will have to overwrite the (static) matlab google-collect.jar (packaged with matlab) with the guava.jar from the toolbox. </div>
<div><a href="http://stackoverflow.com/questions/16366059/best-way-to-override-matlabs-default-static-javaclasspath">http://stackoverflow.com/questions/16366059/best-way-to-override-matlabs-default-static-javaclasspath</a></div>
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<div>I have attached an example file for your benefit.</div>
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<div>3) Startup code : (To set up the class path)</div>
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<div>4) The acquisition code : micromanager_matlab_OMERO.m</div>
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<div>Hope that helps.</div>
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<div>Best,</div>
<div>Balaji</div>
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<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
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<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
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<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">College of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
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<span style="font-weight:bold">From: </span><Alexandrov>, Yuriy <<a href="mailto:y.alexandrov@imperial.ac.uk">y.alexandrov@imperial.ac.uk</a>><br>
<span style="font-weight:bold">Date: </span>Monday, 9 June 2014 16:16<br>
<span style="font-weight:bold">To: </span>Balaji Ramalingam <<a href="mailto:b.ramalingam@dundee.ac.uk">b.ramalingam@dundee.ac.uk</a>><br>
<span style="font-weight:bold">Cc: </span>"Kelly, Douglas J" <<a href="mailto:douglas.kelly09@imperial.ac.uk">douglas.kelly09@imperial.ac.uk</a>>, "Kumar, Sunil" <<a href="mailto:sunil.kumar03@imperial.ac.uk">sunil.kumar03@imperial.ac.uk</a>><br>
<span style="font-weight:bold">Subject: </span>Micro-Manager with Matlab<br>
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<p class="MsoNormal">Dear Balaji,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thanks for Your kind attention and patience during our discussion of the issue at OME User meeting in Paris.<o:p></o:p></p>
<p class="MsoNormal">Your demonstration was impressive and practical at the same time.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I would like to ask for any code examples or related software that You find possible to share, and helpful for us to drive our devices via Micro-Manager (e.g. Plate Readers) directly from Matlab, and save data on disk or directly to Omero.<o:p></o:p></p>
<p class="MsoNormal">My colleagues Doug Kelly and Sunil Kumar are involved in Plate Readers and OPT hardware design and data acquisition, so they might be interested.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hope to hear from You soon & keep collaborating,<o:p></o:p></p>
<p class="MsoNormal">Best wishes,<o:p></o:p></p>
<p class="MsoNormal">Yuriy<o:p></o:p></p>
<p class="MsoNormal"><o:p></o:p></p>
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