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Hi Yanling,
<div><br>
</div>
<div>Yes the --sudo flag was also part of the 5.0.2 release and definitely applies to the import.</div>
<div>So you should be able to call the following to perform a import-as operation via CLI:</div>
<div><br>
</div>
<div>$ bin/omero import --sudo root -d 'Dataset:51' -s localhost -u user /path_to_file</div>
<div><br>
</div>
<div>Note that this functionality is currently restricted to admins although we plan to extend</div>
<div>it to group owners in the future.</div>
<div><br>
</div>
<div>Sebastien</div>
<div><br>
</div>
<div>
<div>
<div><br>
</div>
<div>On 29 May 2014, at 20:18, Yanling Liu <<a href="mailto:vrnova@gmail.com">vrnova@gmail.com</a>> wrote:</div>
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<div>Hello Sebastien,<br>
<br>
</div>
Thanks for your message. I have performed OMERO upgrade to 5.0.2. The bin/omero obj command worked as described. Great!<br>
</div>
<br>
</div>
I can see the obj command has the option to create projects for other users with --sudo flag. Does the flag apply to bin/omero import too? In other words, can I import data as administrator for other users without typing each user's password using bin/omero
import?<br>
<br>
I have tried to do following command but failed, of course dataset #51 does not belong to the root user.<br>
<br>
bin/omero import -d 'Dataset:51' -s localhost -u root /path_to_file<br>
<br>
</div>
Thanks,<br>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Thu, May 29, 2014 at 11:06 AM, Sebastien Besson <span dir="ltr">
<<a href="mailto:s.besson@dundee.ac.uk" target="_blank">s.besson@dundee.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Hi Yanling,
<div><br>
</div>
<div>as part of the last 5.0.2 release of OMERO, the CLI now supports a new `obj` command [1].</div>
<div>This command allows the creation of containers amongst other things. As an example, the</div>
<div>creation of projects and datasets should now be achievable via</div>
<div><br>
</div>
<div>$ bin/omero obj new Project name=project</div>
<div>$ bin/omero obj new Dataset name=dataset</div>
<div>
<div><br>
</div>
<div>As an aside, we have started working on a script to setup our training material which combines</div>
<div>`bin/omero obj` and `bin/omero import` and may be informative:</div>
<div><a href="https://github.com/openmicroscopy/openmicroscopy/pull/2561/files" target="_blank">https://github.com/openmicroscopy/openmicroscopy/pull/2561/files</a></div>
<div>Note our next step is the extension of the CLI documentation [2] to add some description on this</div>
<div>command and its usage.</div>
<div><br>
</div>
<div>Best,</div>
<div>Sebastien</div>
<div><br>
</div>
<div>
<pre>[1] <a href="http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-webstart-codesigning.html" target="_blank">https://github.com/openmicroscopy/openmicroscopy/pull/2409</a></pre>
<pre>[2] <a href="http://www.openmicroscopy.org/site/support/omero5/users/command-line-interface.html" target="_blank">http://www.openmicroscopy.org/site/support/omero5/users/command-line-interface.html</a></pre>
<pre><br></pre>
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<div class="h5">
<div>On 29 May 2014, at 15:50, Yanling Liu <<a href="mailto:vrnova@gmail.com" target="_blank">vrnova@gmail.com</a>> wrote:</div>
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<div>Hello,<br>
<br>
</div>
Is it possible to create new project and dataset in CLI import? <br>
<br>
For example, it would be great if I can use following command to import a set of images to a user while creating new project and dataset on the fly.<br>
<br>
</div>
bin/omero -s localhost -u user import path_to_file -project project_name_or_id -dataset dataset_name_or_id<br>
<br>
</div>
The reason I am asking is because we have 10TB existing images to be imported into OMERO. Create new project and dataset and import images into them would save us a lot of time.<br>
<br>
Thanks,<br>
Yanling<br>
</div>
</div>
</div>
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<div style="word-wrap:break-word">
<div>Dr Sébastien Besson</div>
<div>Open Microscopy Environment / Harvard Medical School</div>
<div>Wellcome Trust Centre for Gene Regulation and Expression,</div>
<div>College of Life Sciences, University of Dundee, Dow Street,</div>
<div>Dundee DD1 5EH Scotland UK Tel: (01382) 386364</div>
</div>
</span></div>
</span></div>
<br>
<br>
<span style="font-size:10pt">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">
<div>Dr Sébastien Besson</div>
<div>Open Microscopy Environment / Harvard Medical School</div>
<div>Wellcome Trust Centre for Gene Regulation and Expression,</div>
<div>College of Life Sciences, University of Dundee, Dow Street,</div>
<div>Dundee DD1 5EH Scotland UK Tel: (01382) 386364</div>
</div>
</span></div>
</span></span></div>
<br>
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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