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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D">Thanks Curtis and Blazej,<o:p></o:p></span></p>
<span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D"><o:p></o:p></span></div>
</blockquote>
Hi Ghislain,<br>
<br>
<blockquote cite="mid:A254FE7F4FD59D44800F652873FF5DE328F3A2E6@023-DB3MPN3-153.023d.mgd.msft.net" type="cite">
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D">Yes my version of eclipse comes with M2E, though it is called &#8220;import Maven Project&#8221;.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D">When I select the location of the Bioformat GIT clone location, I get the following. It seems like I can select which projects I need. I am however unsure which
 one I should get to have the sources for the image readers and whatever constitutes the loci_tools.jar.<o:p></o:p></span></p>
<span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D"><o:p></o:p></span></div>
</blockquote>
The projects you'd be interested in are formats-api, formats-bsd and formats-gpl (formats-common<br>
contains helper classes used by the readers). The loci_tools.jar file is an indirect product<br>
of compiling formats-api. More details can be found in &quot;ant/toplevel.xml&quot;, where the targets<br>
for the Ant build system are defined.<br>
<br>
I also hope that <a class="moz-txt-link-freetext" href="http://www.openmicroscopy.org/site/support/bio-formats5/developers/index.html">
http://www.openmicroscopy.org/site/support/bio-formats5/developers/index.html</a><br>
will help you to navigate the project tree.<br>
<br>
Regards,<br>
Blazej<br>
<br>
<blockquote cite="mid:A254FE7F4FD59D44800F652873FF5DE328F3A2E6@023-DB3MPN3-153.023d.mgd.msft.net" type="cite">
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D">Thanks again for the help<o:p></o:p></span></p>
<p class="MsoNormal"><img id="Picture_x0020_1" src="cid:part1.08040402.03080807@dundee.ac.uk" height="893" width="644"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;;color:#1F497D">Ghislain Bonamy, PhD<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:&quot;Calibri&quot;,&quot;sans-serif&quot;;color:#1F497D"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:&quot;Tahoma&quot;,&quot;sans-serif&quot;">From:</span></b><span style="font-size:10.0pt;font-family:&quot;Tahoma&quot;,&quot;sans-serif&quot;">
<a class="moz-txt-link-abbreviated" href="mailto:ctrueden.wisc@gmail.com">ctrueden.wisc@gmail.com</a> [<a class="moz-txt-link-freetext" href="mailto:ctrueden.wisc@gmail.com">mailto:ctrueden.wisc@gmail.com</a>]
<b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Tuesday, March 25, 2014 11:03 PM<br>
<b>To:</b> Blazej Pindelski<br>
<b>Cc:</b> Bonamy, Ghislain; <a class="moz-txt-link-abbreviated" href="mailto:ome-devel@lists.openmicroscopy.org.uk">
ome-devel@lists.openmicroscopy.org.uk</a><br>
<b>Subject:</b> Re: [ome-devel] Importing source into eclipse<o:p></o:p></span></p>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
<div>
<p class="MsoNormal">Hi Ghislain,<o:p></o:p></p>
<div>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
</div>
<div>
<p class="MsoNormal">&gt;&nbsp;<span style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">Once the build finishes, you can follow the steps outlined</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">Note that those instructions are rather out of date now. If you use the &quot;Eclipse IDE for Java developers&quot; bundle of Kepler (4.3), it comes with the M2E plugin (i.e., Maven
 support).</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">Here is the table of which versions of Eclipse come with Maven support:</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">&nbsp; &nbsp; <a moz-do-not-send="true" href="http://eclipse.org/downloads/compare.php?release=kepler">
http://eclipse.org/downloads/compare.php?release=kepler</a></span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">You can also skip the &quot;ant jars&quot; and &quot;mvn generate-sources&quot; steps if you simply close the ome-xml project after importing Bio-Formats. (That project is the only one with a problem in Eclipse,
 since it generates most of its own source code.) Once ome-xml is closed, the other components should not show any errors.</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">Regards,</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:&quot;Arial&quot;,&quot;sans-serif&quot;">Curtis</span><o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p>&nbsp;</o:p></p>
<div>
<p class="MsoNormal">On Tue, Mar 25, 2014 at 4:49 AM, Blazej Pindelski &lt;<a moz-do-not-send="true" href="mailto:b.pindelski@dundee.ac.uk" target="_blank">b.pindelski@dundee.ac.uk</a>&gt; wrote:<o:p></o:p></p>
<p class="MsoNormal">&gt; Hi Everyone,<br>
<br>
Hi Ghislain,<o:p></o:p></p>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
&gt; &nbsp;I was hoping someone could guide me through importing the Bioformats project into eclipse. I remember I am supposed to use GIT and Maven project import, but I am not 100% sure how to do this again.<o:p></o:p></p>
</div>
<p class="MsoNormal">Git is used to clone the code from the github repository at <a moz-do-not-send="true" href="https://github.com/openmicroscopy/bioformats" target="_blank">
https://github.com/openmicroscopy/bioformats</a>. There is an HTTPS clone URL.<br>
This will give you a local copy of the Bioformats code.<br>
<br>
To remove any post-import errors in Eclipse, I suggest you run &quot;ant jars&quot; and &quot;mvn generate-sources&quot; in your newly cloned<br>
repository. Once the build finishes, you can follow the steps outlined in<br>
<a moz-do-not-send="true" href="https://www.openmicroscopy.org/site/support/bio-formats5/developers/developing-bf.html?highlight=eclipse" target="_blank">https://www.openmicroscopy.org/site/support/bio-formats5/developers/developing-bf.html?highlight=eclipse</a>.<br>
<br>
I hope that helps.<br>
<br>
Regards,<br>
Blazej<o:p></o:p></p>
<div>
<p class="MsoNormal"><br>
&gt; Thanks in advance to give me the instructions to get this done (and requirements if needed), or point me to a short tutorial.<br>
&gt;<br>
&gt; Best,<br>
&gt;<br>
&gt; Ghislain Bonamy, PhD<br>
&gt;<o:p></o:p></p>
</div>
<p class="MsoNormal">&gt; _______________________________________________<br>
&gt; ome-devel mailing list<br>
&gt; <a moz-do-not-send="true" href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a><br>
&gt; <a moz-do-not-send="true" href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel" target="_blank">
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><br>
<br>
<br>
The University of Dundee is a registered Scottish Charity, No: SC015096<br>
_______________________________________________<br>
ome-devel mailing list<br>
<a moz-do-not-send="true" href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a><br>
<a moz-do-not-send="true" href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel" target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><o:p></o:p></p>
</div>
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
</div>
</div>
</blockquote>
<br>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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