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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks Curtis and Blazej,<o:p></o:p></span></p>
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></div>
</blockquote>
Hi Ghislain,<br>
<br>
<blockquote cite="mid:A254FE7F4FD59D44800F652873FF5DE328F3A2E6@023-DB3MPN3-153.023d.mgd.msft.net" type="cite">
<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Yes my version of eclipse comes with M2E, though it is called “import Maven Project”.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">When I select the location of the Bioformat GIT clone location, I get the following. It seems like I can select which projects I need. I am however unsure which
one I should get to have the sources for the image readers and whatever constitutes the loci_tools.jar.<o:p></o:p></span></p>
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></div>
</blockquote>
The projects you'd be interested in are formats-api, formats-bsd and formats-gpl (formats-common<br>
contains helper classes used by the readers). The loci_tools.jar file is an indirect product<br>
of compiling formats-api. More details can be found in "ant/toplevel.xml", where the targets<br>
for the Ant build system are defined.<br>
<br>
I also hope that <a class="moz-txt-link-freetext" href="http://www.openmicroscopy.org/site/support/bio-formats5/developers/index.html">
http://www.openmicroscopy.org/site/support/bio-formats5/developers/index.html</a><br>
will help you to navigate the project tree.<br>
<br>
Regards,<br>
Blazej<br>
<br>
<blockquote cite="mid:A254FE7F4FD59D44800F652873FF5DE328F3A2E6@023-DB3MPN3-153.023d.mgd.msft.net" type="cite">
<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks again for the help<o:p></o:p></span></p>
<p class="MsoNormal"><img id="Picture_x0020_1" src="cid:part1.08040402.03080807@dundee.ac.uk" height="893" width="644"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#1F497D">Ghislain Bonamy, PhD<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">
<a class="moz-txt-link-abbreviated" href="mailto:ctrueden.wisc@gmail.com">ctrueden.wisc@gmail.com</a> [<a class="moz-txt-link-freetext" href="mailto:ctrueden.wisc@gmail.com">mailto:ctrueden.wisc@gmail.com</a>]
<b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Tuesday, March 25, 2014 11:03 PM<br>
<b>To:</b> Blazej Pindelski<br>
<b>Cc:</b> Bonamy, Ghislain; <a class="moz-txt-link-abbreviated" href="mailto:ome-devel@lists.openmicroscopy.org.uk">
ome-devel@lists.openmicroscopy.org.uk</a><br>
<b>Subject:</b> Re: [ome-devel] Importing source into eclipse<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">Hi Ghislain,<o:p></o:p></p>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">> <span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Once the build finishes, you can follow the steps outlined</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Note that those instructions are rather out of date now. If you use the "Eclipse IDE for Java developers" bundle of Kepler (4.3), it comes with the M2E plugin (i.e., Maven
support).</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Here is the table of which versions of Eclipse come with Maven support:</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Arial","sans-serif""> <a moz-do-not-send="true" href="http://eclipse.org/downloads/compare.php?release=kepler">
http://eclipse.org/downloads/compare.php?release=kepler</a></span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Arial","sans-serif"">You can also skip the "ant jars" and "mvn generate-sources" steps if you simply close the ome-xml project after importing Bio-Formats. (That project is the only one with a problem in Eclipse,
since it generates most of its own source code.) Once ome-xml is closed, the other components should not show any errors.</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Arial","sans-serif"">Regards,</span><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Arial","sans-serif"">Curtis</span><o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On Tue, Mar 25, 2014 at 4:49 AM, Blazej Pindelski <<a moz-do-not-send="true" href="mailto:b.pindelski@dundee.ac.uk" target="_blank">b.pindelski@dundee.ac.uk</a>> wrote:<o:p></o:p></p>
<p class="MsoNormal">> Hi Everyone,<br>
<br>
Hi Ghislain,<o:p></o:p></p>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
> I was hoping someone could guide me through importing the Bioformats project into eclipse. I remember I am supposed to use GIT and Maven project import, but I am not 100% sure how to do this again.<o:p></o:p></p>
</div>
<p class="MsoNormal">Git is used to clone the code from the github repository at <a moz-do-not-send="true" href="https://github.com/openmicroscopy/bioformats" target="_blank">
https://github.com/openmicroscopy/bioformats</a>. There is an HTTPS clone URL.<br>
This will give you a local copy of the Bioformats code.<br>
<br>
To remove any post-import errors in Eclipse, I suggest you run "ant jars" and "mvn generate-sources" in your newly cloned<br>
repository. Once the build finishes, you can follow the steps outlined in<br>
<a moz-do-not-send="true" href="https://www.openmicroscopy.org/site/support/bio-formats5/developers/developing-bf.html?highlight=eclipse" target="_blank">https://www.openmicroscopy.org/site/support/bio-formats5/developers/developing-bf.html?highlight=eclipse</a>.<br>
<br>
I hope that helps.<br>
<br>
Regards,<br>
Blazej<o:p></o:p></p>
<div>
<p class="MsoNormal"><br>
> Thanks in advance to give me the instructions to get this done (and requirements if needed), or point me to a short tutorial.<br>
><br>
> Best,<br>
><br>
> Ghislain Bonamy, PhD<br>
><o:p></o:p></p>
</div>
<p class="MsoNormal">> _______________________________________________<br>
> ome-devel mailing list<br>
> <a moz-do-not-send="true" href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a><br>
> <a moz-do-not-send="true" href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel" target="_blank">
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><br>
<br>
<br>
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</div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
</div>
</blockquote>
<br>
<br>
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