<div dir="ltr">I have a patch attached below that I&#39;d like someone to take a look at.<div><br></div><div>In /loci/formats/in/FV1000Reader.java</div><div>a bunch of per-plane information is available but not put into the metadata store (and therefore won&#39;t show up in conversions to OME-TIFF for example)</div>

<div><br></div><div>The attached patch pulls out these fields from the pty files so that you get Plane fields like this:</div><div><br></div><div>          &lt;Plane DeltaT=&quot;0.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4184E7&quot; TheC=&quot;0&quot; TheT=&quot;0&quot; TheZ=&quot;0&quot;/&gt;<div>

         &lt;Plane DeltaT=&quot;0.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4184E7&quot; TheC=&quot;1&quot; TheT=&quot;0&quot; TheZ=&quot;0&quot;/&gt;</div><div>         &lt;Plane DeltaT=&quot;0.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4184E7&quot; TheC=&quot;2&quot; TheT=&quot;0&quot; TheZ=&quot;0&quot;/&gt;</div>

<div>         &lt;Plane DeltaT=&quot;1512.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4187E7&quot; TheC=&quot;0&quot; TheT=&quot;0&quot; TheZ=&quot;1&quot;/&gt;</div><div>

         &lt;Plane DeltaT=&quot;1512.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4187E7&quot; TheC=&quot;1&quot; TheT=&quot;0&quot; TheZ=&quot;1&quot;/&gt;</div><div>         &lt;Plane DeltaT=&quot;1512.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4187E7&quot; TheC=&quot;2&quot; TheT=&quot;0&quot; TheZ=&quot;1&quot;/&gt;</div>

<div>         &lt;Plane DeltaT=&quot;3025.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.419E7&quot; TheC=&quot;0&quot; TheT=&quot;0&quot; TheZ=&quot;2&quot;/&gt;</div><div>
         &lt;Plane DeltaT=&quot;3025.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.419E7&quot; TheC=&quot;1&quot; TheT=&quot;0&quot; TheZ=&quot;2&quot;/&gt;</div>
<div>         &lt;Plane DeltaT=&quot;3025.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.419E7&quot; TheC=&quot;2&quot; TheT=&quot;0&quot; TheZ=&quot;2&quot;/&gt;</div><div>
         &lt;Plane DeltaT=&quot;4537.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4193E7&quot; TheC=&quot;0&quot; TheT=&quot;0&quot; TheZ=&quot;3&quot;/&gt;</div>
<div>         &lt;Plane DeltaT=&quot;4537.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4193E7&quot; TheC=&quot;1&quot; TheT=&quot;0&quot; TheZ=&quot;3&quot;/&gt;</div><div>

         &lt;Plane DeltaT=&quot;4537.0&quot; PositionX=&quot;3.1997411E7&quot; PositionY=&quot;4.0177623E7&quot; PositionZ=&quot;2.4193E7&quot; TheC=&quot;2&quot; TheT=&quot;0&quot; TheZ=&quot;3&quot;/&gt;</div><div><br>
</div>
<div><div>A few questions;</div><div>* The units for the PositionX, PositionY, PositionZ are not clear to me. The input format gives it&#39;s units, but schema documentation just says &quot;units are in the microscope reference frame&quot;] and I&#39;m not sure what that means.</div>

<div>* I&#39;m relying on Axis 7 containing the stage information, but I have no idea if that is always expected. Do you have better documentation?</div><div>* This works on the files I have, but if there are regression tests for this format somewhere that need to be updated, I haven&#39;t found them (and it&#39;s not clear to me how to run this, so pointers appreciated).</div>

<div>* I also haven&#39;t programmed in Java for a while, so if I&#39;ve done random stuff wrong, please let me know!</div><div><br></div><div>Thanks.</div>-- <br>Patrick Riley<br><a href="mailto:pfr@google.com" target="_blank" class="cremed">pfr@google.com</a><br>


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