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Hi Curtis,
<div><br>
</div>
<div>following this thread, the PR has been merged, the live documentation has been updated and include now a proper "Installing OMERO from source" section in the developer documentation.</div>
<div><br>
</div>
<div>Thanks for all the feedback,</div>
<div>Sebastien</div>
<div><br>
<div><span class="Apple-style-span" style="orphans:2; text-indent:0px; widows:2"><span class="Apple-style-span" style="orphans:2; text-indent:0px; widows:2">
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<div style="word-wrap:break-word">
<div>On Tue, Mar 26, 2013 at 3:25 PM, Curtis Rueden <ctrueden at <a href="http://wisc.edu">
wisc.edu</a>>wrote:</div>
</div>
</span></div>
</span></span></div>
<div><br>
</div>
<blockquote type="cite">
<div><font class="Apple-style-span" color="#000000">Hi Sebastian,</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">> I tried to convert most of your comments into a documentation Pull</font></div>
<div><font class="Apple-style-span" color="#000000">> Request: <a href="https://github.com/openmicroscopy/ome-documentation/pull/301">
https://github.com/openmicroscopy/ome-documentation/pull/301</a></font></div>
<div><font class="Apple-style-span" color="#000000">> Please have a look at it and let me know if I missed important points.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">Thanks for the rapid turnaround! I like the changes. I wrote a few thoughts</font></div>
<div><font class="Apple-style-span" color="#000000">in the PR.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">> - or keep all installation pages under sysadmin and split section</font></div>
<div><font class="Apple-style-span" color="#000000">> containing source code/downloads specificities</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">Since this option is what the PR does at the moment, and is less</font></div>
<div><font class="Apple-style-span" color="#000000">disruptive, I think it's fine.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">> I don't have a strong opinion on which of these options is the best.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">Me either.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">> As long as we can improve the visibility/navigation without increasing</font></div>
<div><font class="Apple-style-span" color="#000000">> the developers maintenance burden, I am open to any suggestion.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">Right. It might we worth adding a blurb to the top of the two sysadmin</font></div>
<div><font class="Apple-style-span" color="#000000">walkthrough pages which explicitly states something like:</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">This walkthrough covers installation of OMERO from either a binary</font></div>
<div><font class="Apple-style-span" color="#000000">distribution or from source. Both installations are very similar?the</font></div>
<div><font class="Apple-style-span" color="#000000">prerequisites must be installed in either case?with differences outlined</font></div>
<div><font class="Apple-style-span" color="#000000">below in the "Development server" section.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">Lastly, we could add a new bullet point to the toplevel OMERO developer</font></div>
<div><font class="Apple-style-span" color="#000000">documentation page, in the "Introduction to OMERO" section: "Installing</font></div>
<div><font class="Apple-style-span" color="#000000">OMERO from source" with two sub-items, "OS X" and "Linux", which link to</font></div>
<div><font class="Apple-style-span" color="#000000">the two respective walkthroughs. Such a link would have helped me a lot</font></div>
<div><font class="Apple-style-span" color="#000000">personally, because the first thing I looked for was an "installing OMERO</font></div>
<div><font class="Apple-style-span" color="#000000">from source" sort of page in the developer documentation section. And while</font></div>
<div><font class="Apple-style-span" color="#000000">that page does state at the top that "Instructions on downloading,</font></div>
<div><font class="Apple-style-span" color="#000000">installation and administering OMERO can be found under the System</font></div>
<div><font class="Apple-style-span" color="#000000">Administrator Documentation of the main site", this sentence implies (to</font></div>
<div><font class="Apple-style-span" color="#000000">me) that those pages will be about downloading and installing from tarball</font></div>
<div><font class="Apple-style-span" color="#000000">only, not from source.</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">Regards,</font></div>
<div><font class="Apple-style-span" color="#000000">Curtis</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">On Tue, Mar 26, 2013 at 7:01 AM, Sebastien Besson <s.besson at
<a href="http://dundee.ac.uk">dundee.ac.uk</a>>wrote:</font></div>
<div><font class="Apple-style-span" color="#000000"><br>
</font></div>
<div><font class="Apple-style-span" color="#000000">> Hi Curtis,</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> first of all, thanks for the feedback. It is always nice to have people</font></div>
<div><font class="Apple-style-span" color="#000000">> testing these installation instructions.</font></div>
<div><font class="Apple-style-span" color="#000000">> I tried to convert most of your comments into a documentation Pull</font></div>
<div><font class="Apple-style-span" color="#000000">> Request: <a href="https://github.com/openmicroscopy/ome-documentation/pull/301">
https://github.com/openmicroscopy/ome-documentation/pull/301</a></font></div>
<div><font class="Apple-style-span" color="#000000">> Please have a look at it and let me know if I missed important points.</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> Re Homebrew, note we have run into problems because Homebrew wasn't</font></div>
<div><font class="Apple-style-span" color="#000000">> installed in the default /usr/local.</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> Re source installation vs downloaded tarball, I see your point and I</font></div>
<div><font class="Apple-style-span" color="#000000">> think there are two solutions:</font></div>
<div><font class="Apple-style-span" color="#000000">> - either host source installation pages in the developer documentation</font></div>
<div><font class="Apple-style-span" color="#000000">> - or keep all installation pages under sysadmin and split section</font></div>
<div><font class="Apple-style-span" color="#000000">> containing source code/downloads specificities</font></div>
<div><font class="Apple-style-span" color="#000000">> I don't have a strong opinion on which of these options is the best. As</font></div>
<div><font class="Apple-style-span" color="#000000">> long as we can improve the visibility/navigation without increasing the</font></div>
<div><font class="Apple-style-span" color="#000000">> developers maintenance burden, I am open to any suggestion.</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> Regards,</font></div>
<div><font class="Apple-style-span" color="#000000">> Sebastien</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> On 25 Mar 2013, at 20:42, Curtis Rueden wrote:</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> Hi again,</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> > Seems like the web client is receiving 404s for many static resources</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> After some assistance from the OMERO team, the fix was:</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> $ omero config set omero.web.debug True</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> I somehow missed this line from the OS X Homebrew walkthrough.</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> If a more general-purpose "Development server" section is created</font></div>
<div><font class="Apple-style-span" color="#000000">> (and/or copied into the Linux walkthrough), this is indeed another</font></div>
<div><font class="Apple-style-span" color="#000000">> important point.</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> Regards,</font></div>
<div><font class="Apple-style-span" color="#000000">> Curtis</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> On Mon, Mar 25, 2013 at 3:31 PM, Curtis Rueden <ctrueden at
<a href="http://wisc.edu">wisc.edu</a>> wrote:</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">>> Hi all,</font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">>> Looks like I spoke too soon about everything being fine with my OMERO</font></div>
<div><font class="Apple-style-span" color="#000000">>> Linux dev install. Seems like the web client is receiving 404s for many</font></div>
<div><font class="Apple-style-span" color="#000000">>> static resources [1]. Any ideas?</font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">>> Thanks,</font></div>
<div><font class="Apple-style-span" color="#000000">>> Curtis</font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">>> [1] <a href="http://curtis.imagej.net/omero-web-404s.png">
http://curtis.imagej.net/omero-web-404s.png</a></font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">>> On Mon, Mar 25, 2013 at 3:11 PM, Curtis Rueden <ctrueden at
<a href="http://wisc.edu">wisc.edu</a>> wrote:</font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> Hi everyone,</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> I recently set up an OMERO developer installation (i.e.., from</font></div>
<div><font class="Apple-style-span" color="#000000">>>> openmicroscopy.git), and thought I would pass along some notes, comments</font></div>
<div><font class="Apple-style-span" color="#000000">>>> and suggestions relating to my experiences. Perhaps it is useful to help</font></div>
<div><font class="Apple-style-span" color="#000000">>>> refine the documentation.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> First I tried setting up OMERO on an OS X workstation using Homebrew</font></div>
<div><font class="Apple-style-span" color="#000000">>>> by following the walkthrough guide [1]. Unfortunately, I ran into quite a</font></div>
<div><font class="Apple-style-span" color="#000000">>>> bit of trouble [3].</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> Ultimately, I gave up and decided to install into an Ubuntu Linux VM</font></div>
<div><font class="Apple-style-span" color="#000000">>>> instead according to the Linux walkthrough guide [2], which I now have</font></div>
<div><font class="Apple-style-span" color="#000000">>>> working [4]. The directions in the Linux walkthrough worked. Some brief</font></div>
<div><font class="Apple-style-span" color="#000000">>>> comments there:</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> 1) Version numbers are out of date for Ubuntu 12.04, of course.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> 2) python-tables installed OK (I think), so I skipped the liblzo2-2</font></div>
<div><font class="Apple-style-span" color="#000000">>>> install.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> 3) I used openjdk-7-jdk instead of building a sun-java6-jdk as shown</font></div>
<div><font class="Apple-style-span" color="#000000">>>> in the instructions, and OMERO seems to run fine (so far).</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> Note that the OS X Homebrew guide has a small "Developer server"</font></div>
<div><font class="Apple-style-span" color="#000000">>>> section, but the corresponding Linux walkthrough guide has no such section.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> In general, I did not know which guide to follow for a developer</font></div>
<div><font class="Apple-style-span" color="#000000">>>> installation from source, rather than one from a downloaded tarball. Would</font></div>
<div><font class="Apple-style-span" color="#000000">>>> it make sense to have a separate, dedicated page for that, which links to</font></div>
<div><font class="Apple-style-span" color="#000000">>>> the other guides as appropriate (for prereqs etc.) but which also explains</font></div>
<div><font class="Apple-style-span" color="#000000">>>> the differences when building and running from source?</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> Regards,</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Curtis</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> [1]</font></div>
<div><font class="Apple-style-span" color="#000000">>>> <a href="https://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-homebrew.html">
https://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-homebrew.html</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> [2]</font></div>
<div><font class="Apple-style-span" color="#000000">>>> <a href="https://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-linux.html">
https://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-linux.html</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> [3] Selected logs from OS X Homebrew installation attempt:</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ sw_vers</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ProductName: Mac OS X</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ProductVersion: 10.6.8</font></div>
<div><font class="Apple-style-span" color="#000000">>>> BuildVersion: 10K549</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ brew --config</font></div>
<div><font class="Apple-style-span" color="#000000">>>> HOMEBREW_VERSION: 0.9.4</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ORIGIN: <a href="https://github.com/mxcl/homebrew.git">
https://github.com/mxcl/homebrew.git</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>> HEAD: 35633640f3f322667ac067c73ab0b4c84022710c</font></div>
<div><font class="Apple-style-span" color="#000000">>>> HOMEBREW_PREFIX: /Users/curtis/brew</font></div>
<div><font class="Apple-style-span" color="#000000">>>> HOMEBREW_CELLAR: /Users/curtis/brew/Cellar</font></div>
<div><font class="Apple-style-span" color="#000000">>>> CPU: dual-core 64-bit penryn</font></div>
<div><font class="Apple-style-span" color="#000000">>>> OS X: 10.6.8-i386</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Xcode: 3.2.6</font></div>
<div><font class="Apple-style-span" color="#000000">>>> GCC-4.0: build 5494</font></div>
<div><font class="Apple-style-span" color="#000000">>>> GCC-4.2: build 5666</font></div>
<div><font class="Apple-style-span" color="#000000">>>> LLVM-GCC: build 2335</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Clang: 1.7 build 77</font></div>
<div><font class="Apple-style-span" color="#000000">>>> X11: 2.3.6 => /usr/X11</font></div>
<div><font class="Apple-style-span" color="#000000">>>> System Ruby: 1.8.7-358</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Perl: /usr/bin/perl</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Python: /Users/curtis/brew/bin/python =></font></div>
<div><font class="Apple-style-span" color="#000000">>>> /Users/curtis/brew/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/bin/python2.7</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Ruby: /usr/bin/ruby =></font></div>
<div><font class="Apple-style-span" color="#000000">>>> /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ brew install postgresql</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> Downloading</font></div>
<div><font class="Apple-style-span" color="#000000">>>> <a href="http://ftp.postgresql.org/pub/source/v9.2.3/postgresql-9.2.3.tar">
http://ftp.postgresql.org/pub/source/v9.2.3/postgresql-9.2.3.tar</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>> ########################################################################</font></div>
<div><font class="Apple-style-span" color="#000000">>>> 100.0%</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> Patching</font></div>
<div><font class="Apple-style-span" color="#000000">>>> patching file src/pl/plpython/Makefile</font></div>
<div><font class="Apple-style-span" color="#000000">>>> patching file contrib/uuid-ossp/uuid-ossp.c</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Warning: Detected a framework Python that does not have 64-bit support</font></div>
<div><font class="Apple-style-span" color="#000000">>>> in:</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /Library/Frameworks/Python.framework/Versions/Current/Python</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> e configure script seems to prefer this version of Python over any</font></div>
<div><font class="Apple-style-span" color="#000000">>>> others,</font></div>
<div><font class="Apple-style-span" color="#000000">>>> you may experience linker problems as described in:</font></div>
<div><font class="Apple-style-span" color="#000000">>>> <a href="http://osdir.com/ml/pgsql-general/2009-09/msg00160.html">
http://osdir.com/ml/pgsql-general/2009-09/msg00160.html</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> fix this issue, you may need to either delete the version of Python</font></div>
<div><font class="Apple-style-span" color="#000000">>>> own above, or move it out of the way before brewing PostgreSQL.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> te that a framework Python in /Library/Frameworks/Python.framework is</font></div>
<div><font class="Apple-style-span" color="#000000">>>> e "MacPython" version, and not the system-provided version which is in:</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /System/Library/Frameworks/Python.framework</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> ./configure --prefix=/Users/curtis/brew/Cellar/postgresql/9.2.3</font></div>
<div><font class="Apple-style-span" color="#000000">>>> --datadir=/U</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> make install-world</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -d</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/share/postgresql/extension'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -m 755 adminpack.so</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/lib/adminpack.so'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -m 644 ./adminpack.control</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/share/postgresql/extension/'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -m 644 ./adminpack--1.0.sql</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/share/postgresql/extension/'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> make: *** [install-world-contrib-recurse] Error 2</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ sudo mv /Library/Frameworks/Python.framework /Library/Frameworks/pfx</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ brew install postgresql</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> Downloading</font></div>
<div><font class="Apple-style-span" color="#000000">>>> <a href="http://ftp.postgresql.org/pub/source/v9.2.3/postgresql-9.2.3.tar">
http://ftp.postgresql.org/pub/source/v9.2.3/postgresql-9.2.3.tar</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>> Already downloaded:</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /Users/curtis/Library/Caches/Homebrew/postgresql-9.2.3.tar.bz2</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> Patching</font></div>
<div><font class="Apple-style-span" color="#000000">>>> patching file src/pl/plpython/Makefile</font></div>
<div><font class="Apple-style-span" color="#000000">>>> patching file contrib/uuid-ossp/uuid-ossp.c</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> ./configure --prefix=/Users/curtis/brew/Cellar/postgresql/9.2.3</font></div>
<div><font class="Apple-style-span" color="#000000">>>> --datadir=/U</font></div>
<div><font class="Apple-style-span" color="#000000">>>> ==> make install-world</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -m 755 adminpack.so</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/lib/adminpack.so'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -d</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/share/postgresql/extension'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -m 644 ./adminpack.control</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/share/postgresql/extension/'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> /bin/sh ../../config/install-sh -c -m 644 ./adminpack--1.0.sql</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/Users/curtis/brew/Cellar/postgresql/9.2.3/share/postgresql/extension/'</font></div>
<div><font class="Apple-style-span" color="#000000">>>> make: *** [install-world-contrib-recurse] Error 2</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ sudo mv /Library/Frameworks/pfx /Library/Frameworks/Python.framework</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ brew doctor</font></div>
<div><font class="Apple-style-span" color="#000000">>>> Warning: Your Homebrew is not installed to /usr/local</font></div>
<div><font class="Apple-style-span" color="#000000">>>> You can install Homebrew anywhere you want, but some brews may only build</font></div>
<div><font class="Apple-style-span" color="#000000">>>> correctly if you install in /usr/local. Sorry!</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> (Note: the logs above do not include another failure I had when</font></div>
<div><font class="Apple-style-span" color="#000000">>>> installing berkeley-db46.)</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> [4] Selected logs from OMERO Linux installation:</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> $ omero config get omero.db.name</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> ********************************************************************************</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> ERROR: Could not import omero.cli! (No module named omero.cli)</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> This means that your installation is incomplete. Contact</font></div>
<div><font class="Apple-style-span" color="#000000">>>> the OME mailing lists for more information:</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> <a href="http://www.openmicroscopy.org/site/community">http://www.openmicroscopy.org/site/community</a></font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> If you are building from source, please supply the build log</font></div>
<div><font class="Apple-style-span" color="#000000">>>> as well as which version you are building from. If you</font></div>
<div><font class="Apple-style-span" color="#000000">>>> downloaded a distribution, please provide which link you</font></div>
<div><font class="Apple-style-span" color="#000000">>>> used.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> ********************************************************************************</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> Debugging Info:</font></div>
<div><font class="Apple-style-span" color="#000000">>>> --------------</font></div>
<div><font class="Apple-style-span" color="#000000">>>> CWD=/home/curtis/code/ome/openmicroscopy</font></div>
<div><font class="Apple-style-span" color="#000000">>>> VERSION=2.7.3 (default, Aug 1 2012, 05:14:39) [GCC 4.6.3]</font></div>
<div><font class="Apple-style-span" color="#000000">>>> OMERO_HOME=/home/curtis/code/ome/openmicroscopy</font></div>
<div><font class="Apple-style-span" color="#000000">>>> PYTHONPATH=['/home/curtis/code/ome/openmicroscopy/lib/python',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/home/curtis/code/ome/openmicroscopy/var/lib',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/home/curtis/code/ome/openmicroscopy/dist/bin',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/pymodules/python2.7', '/home/curtis/code/ome/openmicroscopy',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7', '/usr/lib/python2.7/plat-linux2',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/lib-tk', '/usr/lib/python2.7/lib-old',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/lib-dynload', '/usr/local/lib/python2.7/dist-packages',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages', '/usr/lib/python2.7/dist-packages/PIL',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/gst-0.10',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/gtk-2.0',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/ubuntu-sso-client',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/ubuntuone-client',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/ubuntuone-control-panel',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/ubuntuone-couch',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/ubuntuone-installer',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/usr/lib/python2.7/dist-packages/ubuntuone-storage-protocol',</font></div>
<div><font class="Apple-style-span" color="#000000">>>> '/home/curtis/code/ome/openmicroscopy/lib/fallback']</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> To fix, I needed to set OMERO_HOME to "openmicroscopy/dist" subfolder,</font></div>
<div><font class="Apple-style-span" color="#000000">>>> so it could find the Python libs in lib.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>> It would be good to add this as a note to both of the walkthrough</font></div>
<div><font class="Apple-style-span" color="#000000">>>> guides, in the "Developer server" section.</font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>>></font></div>
<div><font class="Apple-style-span" color="#000000">>></font></div>
<div><font class="Apple-style-span" color="#000000">> _______________________________________________</font></div>
<div><font class="Apple-style-span" color="#000000">> ome-devel mailing list</font></div>
<div><font class="Apple-style-span" color="#000000">> ome-devel at <a href="http://lists.openmicroscopy.org.uk">
lists.openmicroscopy.org.uk</a></font></div>
<div><font class="Apple-style-span" color="#000000">> <a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel">
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a></font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> Dr S?bastien Besson</font></div>
<div><font class="Apple-style-span" color="#000000">> Open Microscopy Environment / Harvard Medical School</font></div>
<div><font class="Apple-style-span" color="#000000">> Wellcome Trust Centre for Gene Regulation and Expression,</font></div>
<div><font class="Apple-style-span" color="#000000">> College of Life Sciences, University of Dundee, Dow Street,</font></div>
<div><font class="Apple-style-span" color="#000000">> Dundee DD1 5EH Scotland UK Tel: (01382) 386364</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
<div><font class="Apple-style-span" color="#000000">> The University of Dundee is a registered Scottish Charity, No: SC015096</font></div>
<div><font class="Apple-style-span" color="#000000">></font></div>
</blockquote>
<div></div>
<br>
</div>
<br>
<span style="font-size:10pt">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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