<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Melissa, how are you?<div><br></div><div>Using ScanR importer I found a more recent problem. The dataset I use has labels at the beginning off the file names (A1, A2, A3, ..., A10, A11, A12, B1, ...)</div><div><br></div><div>I believe that your code sorts the images alphabetically at some point: (A1, A10, A11, A12, A2, ...)</div><div><br></div><div>Please note that the following loop didn't work for that dataset. It expects the images to be in a different order, as it remembers the lastListIndex for the next cycle, assuming always increasing well index. </div><div><br></div><div><table class="code" style="margin-top: 0px; margin-right: auto; margin-bottom: 0px; margin-left: auto; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; border-right-width: 1px; border-bottom-width: 1px; border-left-width: 1px; border-right-style: solid; border-bottom-style: solid; border-left-style: solid; border-right-color: rgb(221, 221, 221); border-bottom-color: rgb(221, 221, 221); border-left-color: rgb(221, 221, 221); border-image: initial; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; border-top-width: 0px; border-top-style: initial; border-top-color: initial; border-collapse: collapse; empty-cells: show; font-size: 12px; line-height: 15px; table-layout: fixed; width: 710px; color: rgb(0, 0, 0); font-family: 'Lucida Grande', Arial, sans-serif; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); "><tbody style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L386" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L386" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">386</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> for (int c=0; c<nChannels; c++) {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L387" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L387" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">387</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> for (int i=lastListIndex; i<list.length; i++) {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L388" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L388" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">388</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> String file = list[i];</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L389" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L389" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">389</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> if (file.indexOf(wellPos) != -1 && file.indexOf(zPos) != -1 &&</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L390" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L390" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">390</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> file.indexOf(posPos) != -1 && file.indexOf(tPos) != -1 &&</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L391" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L391" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">391</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> file.indexOf(channelNames.get(c)) != -1)</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L392" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L392" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">392</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L393" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L393" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">393</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> tiffs[next++] = new Location(dir, file).getAbsolutePath();</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L394" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L394" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">394</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> if (c == nChannels - 1) {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L395" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L395" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">395</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> lastListIndex = i;</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L396" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L396" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">396</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L397" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L397" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">397</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> break;</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L398" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L398" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">398</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L399" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L399" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">399</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L400" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java#L400" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">400</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr></tbody></table><div><br></div></div><div><br></div><div>Back in 4.1 the code was inefficient but worked fine in terms of construction of the tiff list. </div><div><br><div><br></div><div><table class="code" style="margin-top: 0px; margin-right: auto; margin-bottom: 0px; margin-left: auto; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; border-right-width: 1px; border-bottom-width: 1px; border-left-width: 1px; border-right-style: solid; border-bottom-style: solid; border-left-style: solid; border-right-color: rgb(221, 221, 221); border-bottom-color: rgb(221, 221, 221); border-left-color: rgb(221, 221, 221); -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; border-top-width: 0px; border-top-style: initial; border-top-color: initial; border-collapse: collapse; empty-cells: show; font-size: 12px; line-height: 15px; table-layout: fixed; width: 710px; color: rgb(0, 0, 0); font-family: 'Lucida Grande', Arial, sans-serif; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; background-color: rgb(255, 255, 255); position: static; z-index: auto; "><tbody style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L309" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L309" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">309</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> for (int c=0; c<nChannels; c++) {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L310" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L310" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">310</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> for (String file : list) {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L311" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L311" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">311</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> if (file.indexOf(wellPos) != -1 && file.indexOf(zPos) != -1 &&</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L312" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L312" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">312</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> file.indexOf(posPos) != -1 && file.indexOf(tPos) != -1 &&</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L313" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L313" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">313</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> file.indexOf(channelNames.get(c)) != -1)</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L314" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L314" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">314</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> {</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L315" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L315" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">315</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> tiffs[next++] = new Location(dir, file).getAbsolutePath();</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L316" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L316" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">316</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> break;</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L317" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L317" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">317</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L318" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L318" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">318</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr><tr style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; "><th id="L319" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0.5em; padding-bottom: 0px; padding-left: 0.5em; font: normal normal normal 12px/normal 'Lucida Grande', Arial, sans-serif; line-height: 18px; border-right-width: 1px; border-right-style: solid; border-right-color: rgb(215, 215, 215); border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(153, 153, 136); font-size: 11px; background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(238, 238, 221); color: rgb(136, 136, 102); font-weight: normal; text-align: right; vertical-align: top; background-position: initial initial; background-repeat: initial initial; "><a href="http://trac.openmicroscopy.org.uk/ome/browser/bioformats.git/components/bio-formats/src/loci/formats/in/ScanrReader.java?rev=beecfd4e0897c3133256646eb2ada5d0dcd088a4#L319" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; outline-style: none; outline-width: initial; outline-color: initial; text-decoration: none; color: rgb(136, 136, 102); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-image: initial; border-width: initial; border-color: initial; ">319</a></th><td style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; padding-top: 1px; padding-right: 2px; padding-bottom: 1px; padding-left: 2px; font: normal normal normal 11px/normal monospace; line-height: 18px; overflow-x: hidden; overflow-y: hidden; vertical-align: top; "> }</td></tr></tbody></table><div><br></div></div></div><div>I have temporally fixed our copy using the upper loop, which is still inefficient for large datasets, it would be interesting to have a quicker importer though. </div><div><br></div><div>Thaanks and best regards,</div><div><br></div><div>Rubén Muñoz</div></body></html>