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</o:shapelayout></xml><![endif]--></head><body lang=DE link=blue vlink=purple><div class=WordSection1><p class=MsoPlainText><span lang=EN-US>Hello everyone,<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US><o:p> </o:p></span></p><p class=MsoPlainText><span lang=EN-US>I just tried to get the total number of planes in an image in matlab.<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>So I opened the file using bfopen.m from the loci website and get the image cell; metadata is stored in the second entry, so trying r = bfopen(..); meta = r{2}; a = meta.getImageCount() b = meta.getPlaneCount(0)<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US><o:p> </o:p></span></p><p class=MsoPlainText>returns a==b==0.<o:p></o:p></p><p class=MsoPlainText><span lang=EN-US>However, running the command line script showinf with the same versions of loci_tools and bio_formats (4.3.3), the correct value is given in line 475:<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>int imageCount = reader.getImageCount();<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US> <o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>Also, when I query<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>getPixelsSizeT(0)<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>getPixelsSizeC(0)<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>in matlab, the correct values are returned, and all the rest of metadata not concerned with planes is returned correctly.<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>meta.getPlaneDeltaT(0,0)<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>returns empy.<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US><o:p> </o:p></span></p><p class=MsoPlainText><span lang=EN-US>I cannot think of any reason for this but the initialization of metadata in bfopen might be different than that in showinf? But then, why should querying it work with anything but planes?<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US><o:p> </o:p></span></p><p class=MsoPlainText><span lang=EN-US>Does any of you have an idea about that?<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US><o:p> </o:p></span></p><p class=MsoPlainText>Cheers<o:p></o:p></p><p class=MsoPlainText>--Heinrich<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>