<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Forwarding to list, per AM.<div><br></div><div>Cheers,</div><div><br></div><div>Jason<br><div><br><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>From: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica">Amina MAANDHUI <<a href="mailto:amina.maandhui@itav-recherche.fr">amina.maandhui@itav-recherche.fr</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>Date: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica">7 January 2011 00:25:00 GMT</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>To: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica">"<a href="mailto:ajpatterson@lifesci.dundee.ac.uk">ajpatterson@lifesci.dundee.ac.uk</a>" <<a href="mailto:ajpatterson@lifesci.dundee.ac.uk">ajpatterson@lifesci.dundee.ac.uk</a>>, "<a href="mailto:jason@lifesci.dundee.ac.uk">jason@lifesci.dundee.ac.uk</a>" <<a href="mailto:jason@lifesci.dundee.ac.uk">jason@lifesci.dundee.ac.uk</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>Subject: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica"><b>RE : [Fwd: SPIM Data Storage Proposal]</b></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><br></div> </div><div>Hello Jason and Andrew,<br><br>I shall start with a few things to know about me.<br><br>I am MAANDHUI Amina the one who made up a program using the Labview software. It aims to control the SPIM that my team has been developping in our lab in Toulouse.<br>I work with Guillaume GAY and Corinne LORENZO met several times during the SpimWorkshop in Dublin.<br>So, please e-mail me any hot news at: <a href="mailto:amina.maandhui@itav-recherche.fr">amina.maandhui@itav-recherche.fr</a>.<br><br>Then, I would like to congratulate you for this proposal.<br>Indeed, it was nowhere near easy to work properly as long as we lacked the storage of<br>angles and objectives data in the previous shema. So well done!<br><br>In fact, the SPIM we developped have the followings devices:<br><br>-- Fluorescence excitation<br><br> -several lasers<br> - AOTF<br> - optical fiber<br> - beam expander<br> - aperture<br> - cylinder lense<br> - objective<br> - Sample stage:<br><br> - x,y,z and theta (independent motorized axes)<br><br> - Emission beam path:<br><br> - objective<br> - motorized filter wheel<br> - tube lens<br> - cooled CCD camera<br><br>In other words we use two objectives and four axes that we definitely need to store in the xml file. <br><br>I am currently trying to write an xml file under the Labview software using the current shema.<br>As soon as I finish I will send you it in order to compare and discuss about other missing parameters. <br>It will also be a way to share our work with all SPIM users and developers. This will help us keep up best collaboration.<br><br>Best Regards,<br><br>MAANDHUI Amina<br><br><br><br><br><br><br>________________________________________<br>De : Guillaume Gay [<a href="mailto:gay@cict.fr">gay@cict.fr</a>]<br>Date d'envoi : jeudi 2 décembre 2010 16:13<br>À : Amina MAANDHUI<br>Objet : [Fwd: SPIM Data Storage Proposal]<br><br>Salut,<br><br>Je ne sais pas si tu as reçu ça..<br><br>Je n'ai pas trop le temps de regarder. Ceci dit, si t'as des questions,<br>pas de pb.<br><br>À +<br><br>Guillaume<br><br>-------- Message transféré --------<br><blockquote type="cite">De: Andrew Patterson <<a href="mailto:ajpatterson@lifesci.dundee.ac.uk">ajpatterson@lifesci.dundee.ac.uk</a>><br></blockquote><blockquote type="cite">À: <a href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a>,<br></blockquote><blockquote type="cite"><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br></blockquote><blockquote type="cite">Cc: Kees Weijer <<a href="mailto:c.j.weijer@dundee.ac.uk">c.j.weijer@dundee.ac.uk</a>>, Guenter Giese<br></blockquote><blockquote type="cite"><<a href="mailto:Guenter.Giese@mpimf-heidelberg.mpg.de">Guenter.Giese@mpimf-heidelberg.mpg.de</a>>, Olaf Selchow<br></blockquote><blockquote type="cite"><<a href="mailto:selchow@zeiss.de">selchow@zeiss.de</a>>, Bernhard Weiss <<a href="mailto:bernhard.weiss@zeiss.de">bernhard.weiss@zeiss.de</a>>, Untzizu<br></blockquote><blockquote type="cite">Elejalde <<a href="mailto:U.Elejalde@dundee.ac.uk">U.Elejalde@dundee.ac.uk</a>>, <a href="mailto:tomancak@mpi-cbg.de">tomancak@mpi-cbg.de</a>,<br></blockquote><blockquote type="cite"><a href="mailto:stelzer@embl.de">stelzer@embl.de</a>, <a href="mailto:emmanuel.reynaud@ucd.ie">emmanuel.reynaud@ucd.ie</a>, <a href="mailto:power@zeiss.de">power@zeiss.de</a>,<br></blockquote><blockquote type="cite"><a href="mailto:huisken@mpi-cbg.de">huisken@mpi-cbg.de</a>, <a href="mailto:ernst.stelzer@physikalischebiologie.de">ernst.stelzer@physikalischebiologie.de</a>,<br></blockquote><blockquote type="cite"><a href="mailto:elagachado@gmail.com">elagachado@gmail.com</a><br></blockquote><blockquote type="cite">Sujet: SPIM Data Storage Proposal<br></blockquote><blockquote type="cite">Date: Thu, 2 Dec 2010 13:51:49 +0000<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Hello SPIM users and developers,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">We have been in talks with various groups from the SPIM community, Single (or Selective) Plane Illumination Microscopy, about how they can store data from this new and expanding field in the OME data formats. We were fortunate enough to be able to look at some of the data people are already collecting and discuss it with them.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">What we have now is a proposal of how to store the data in the current schema. We have a page detailing this proposal and a sample available at:<br></blockquote><blockquote type="cite"><a href="http://www.ome-xml.org/wiki/SPIM/InitialSupport">http://www.ome-xml.org/wiki/SPIM/InitialSupport</a><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">We hope this puts in place a file format you can store your data in but we would welcome the answer to some questions:<br></blockquote><blockquote type="cite">* What have we missed?<br></blockquote><blockquote type="cite">* Can people work with these structures?<br></blockquote><blockquote type="cite">* Are they sufficient for your needs?<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Any comments would be appreciated,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Andrew<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">--<br></blockquote><blockquote type="cite">Andrew Patterson<br></blockquote><blockquote type="cite">Software Developer, Open Microscopy Environment<br></blockquote><blockquote type="cite">Wellcome Trust Centre for Gene Regulation and Expression<br></blockquote><blockquote type="cite">University of Dundee<br></blockquote><br><br></div></blockquote></div><br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; 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