<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>From: </b></span><span style="font-family:'Helvetica'; font-size:medium;">"Josh Moore" <<a href="mailto:josh@glencoesoftware.com">josh@glencoesoftware.com</a>><br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Date: </b></span><span style="font-family:'Helvetica'; font-size:medium;">April 28, 2010 11:17:25 AM GMT+02:00<br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>To: </b></span><span style="font-family:'Helvetica'; font-size:medium;">Rubén Muńoz <<a href="mailto:ruben.munoz@embl.de">ruben.munoz@embl.de</a>><br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Subject: </b></span><span style="font-family:'Helvetica'; font-size:medium;"><b>Example Imageset</b><br></span></div><br><div>Rubén Muńoz writes:<br><blockquote type="cite">Hi Josh, <br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">How are you? <br></blockquote><br>Hi Ruben.<br></div></blockquote><div><br></div><div>Josh, awaited your reply but the circumstances that you have commented in your previous e-mail worried me. I hope that everything is fine at home now and wish you a happy return to Germany. </div><div><br></div><div>When you settle and have time we may also give a call, so that we know that everything is fine.</div><br><blockquote type="cite"><div><br><blockquote type="cite">Some time ago we decided to re-take our discussion on OME-TIF files<br></blockquote><blockquote type="cite">that would be compatible with OMERO.Fs and with our local systems,<br></blockquote><blockquote type="cite">we are very interested in being compliant with the upcoming<br></blockquote><blockquote type="cite">standard. I hope that you are still interested in having a look<br></blockquote><blockquote type="cite">into our data. Please understand that the delay was caused by a bug<br></blockquote><blockquote type="cite">introduced in the OME-XML header that prevented me from loading<br></blockquote><blockquote type="cite">this in OMERO server. Now fixed.<br></blockquote><br>This means that your previous email from Apr. 7, "OME-TIFs", is no longer<br>an issue? If so, how did you fix it?<br></div></blockquote><div><br></div><div>Yes. I was creating wrong tags in the OME.XML header of the OME.TIF files. Very newby mistake by the way (see next):</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>FirstC="1" FirstT="1" FirstZ="1" were wrong values for TiffData tag. FirstC="0" FirstT="0" FirstZ="0" replaced that in my headers as solution to the problem.</div><div><br></div><div>By now the datasets are O.K. for loading with all OME.TIF compatible software.</div><br><blockquote type="cite"><div><br><blockquote type="cite">We will use a folder arrangement to store OME-TIF<br></blockquote><blockquote type="cite">datasets. Currently those will only load in OMERO when placed in<br></blockquote><blockquote type="cite">the same folder, the subfolders are a major requirement here. And a<br></blockquote><blockquote type="cite">question would be, will FileName attribute admit relative paths to<br></blockquote><blockquote type="cite">files?<br></blockquote><br><blockquote type="cite">Like for example "../P002/example_name.ome.xml"<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">I am currently uploading a dataset to the typical ftp server with the name Test_Ruben_001.zip<br></blockquote><br>The answer seems to be yes, but I'll forward this to Melissa and have<br>her look at it. To avoid time delays, you should really use the forums<br>and/or mailing lists with these questions. I think the community would<br>be interested to hear what you are planning on doing. Do you want to<br>forward this email to the list yourself?<br></div></blockquote><div><br></div><div>That would be great. Lately during the Hackathon I commented this to Curtis, he also considered it a good idea back then.</div><div><br></div><div>As commented many times, with or without, we find the format a perfect choice for every acquisition. Also we will like to make the files accessible to OMERO.</div><br><blockquote type="cite"><div><br><blockquote type="cite">Thank you for listening to our case,<br></blockquote><blockquote type="cite">Rubén<br></blockquote><br>Take care,<br></div></blockquote><div><br></div><div>Be well, and let us know if you are.</div><div><br></div><div>Rubén</div><br><blockquote type="cite"><div>~Josh.<br></div></blockquote></div><br></body></html>