<br><font size=2 face="sans-serif">Dear Kevin,</font>
<br>
<br><font size=2 face="sans-serif">Thank you for your reply. The core functionality
of our software (http://www.olympus.co.uk/microscopy/22_scan_R.htm) is
to detect, analyse and classify particles and generate statistics about
found populations. The classification is done through a cytometry like
interface with several histograms, displaying the particles in arbitrary
feature spaces. Currently we are working on extending the particle capacity
to 50m+ particles, resulting in about 25gb of uncompressed particle feature
data. The current data storrage formate is a proprietary, binary one. To
facilitate exchangeablity and data access we would like to move to a standart
formate that suports a structure like this:</font>
<br><font size=2 face="sans-serif">Project/Experiment
/Sample/Particledata</font>
<br><font size=2 face="sans-serif">
/Settings</font>
<br><font size=2 face="sans-serif">
/Result</font>
<br>
<br><font size=2 face="sans-serif">Although I did not yet familiarise myself
in depth with the OME XML data model, it seems to me it could support such
a structure. If so we would be very interested in a hdf implementation
of the ome xml data model.</font>
<br>
<br><font size=2 face="sans-serif">best regards,</font>
<br>
<br><font size=2 face="sans-serif">Daniel</font>
<br>
<br>
<br><font size=2 face="sans-serif">Product Unit Life Science Cell Screening<br>
<br>
OLYMPUS SOFT IMAGING SOLUTIONS GMBH<br>
Sauerbruchstr. 50, 81377 München, Germany/Deutschland<br>
Phone: +49 (89) 579589 - 6632<br>
E-mail: Daniel.Martens@olympus-sis.com<br>
www.olympus-sis.com<br>
<br>
Headquarters Olympus Soft Imaging Solutions GmbH<br>
Johann-Krane-Weg 39, 48149 Münster, Germany/Deutschland<br>
<br>
Registergericht/Register Court: Handelsregister/Commercial Registry Münster,
HRB 10405<br>
Geschäftsführer/Managing Directors: Michael Czempiel (Vors.), Dr. Helmut
Köhler, Masaaki Yamagishi, Koji Fujio<br>
<br>
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<br>
<br>
<br>
<table width=100%>
<tr valign=top>
<td width=40%><font size=1 face="sans-serif"><b>Kevin W Eliceiri <eliceiri@facstaff.wisc.edu></b>
</font>
<br><font size=1 face="sans-serif">Sent by: ome-devel-bounces@lists.openmicroscopy.org.uk</font>
<p><font size=1 face="sans-serif">07/02/2009 21:10</font>
<table border>
<tr valign=top>
<td bgcolor=white>
<div align=center><font size=1 face="sans-serif">Please respond to<br>
eliceiri@wisc.edu</font></div></table>
<br>
<td width=59%>
<table width=100%>
<tr valign=top>
<td>
<div align=right><font size=1 face="sans-serif">To</font></div>
<td><font size=1 face="sans-serif">ome-devel@lists.openmicroscopy.org.uk</font>
<tr valign=top>
<td>
<div align=right><font size=1 face="sans-serif">cc</font></div>
<td>
<tr valign=top>
<td>
<div align=right><font size=1 face="sans-serif">Subject</font></div>
<td><font size=1 face="sans-serif">Re: [ome-devel] OME-HDF</font></table>
<br>
<table>
<tr valign=top>
<td>
<td></table>
<br></table>
<br>
<br>
<br><tt><font size=2>Dear Daniel,<br>
<br>
We in the OME consortium are very interested in developing a "OME-HDF"
format that would complement the current OME-TIFF and use the OME XML data
model (http://www.ome-xml.org/). We have actively applied for resources
to create such a format and have been talking to several interested parties
about a potential specification and their respective needs for a "OME-HDF"
format. We would be very interested in hearing more about your application
and specification needs. <br>
<br>
best regards,<br>
kevin<br>
<br>
Kevin W. Eliceiri<br>
Director<br>
Laboratory for Optical and Computational Instrumentation<br>
http://www.loci.wisc.edu<br>
Room 271 Animal Sciences<br>
1675 Observatory Drive<br>
Madison, WI 53706<br>
Phone: 608-263-6288<br>
Fax: 608-262-4570<br>
<br>
----- Original Message -----<br>
From: Daniel.Martens@Olympus-SIS.com<br>
Date: Thursday, February 5, 2009 2:49 am<br>
Subject: [ome-devel] OME-HDF<br>
To: ome-devel@lists.openmicroscopy.org.uk<br>
<br>
<br>
> Dear OME-experts,<br>
> <br>
> Our group develops a cell screening analysis software, and we are
<br>
> currently looking for a standard format to store the analysis result
<br>
> data. <br>
> I noticed that the OME-group works on an OME-HDF standard. How far
has <br>
> <br>
> this format evolved? Is there already a specification of the HDF <br>
> directory <br>
> structure?<br>
> <br>
> Thank you in advance,<br>
> <br>
> Daniel Martens<br>
> <br>
> <br>
> Product Unit Life Science Cell Screening<br>
> <br>
> OLYMPUS SOFT IMAGING SOLUTIONS GMBH<br>
> Sauerbruchstr. 50, 81377 München, Germany/Deutschland<br>
> Phone: +49 (89) 579589 - 6632<br>
> E-mail: Daniel.Martens@olympus-sis.com<br>
> www.olympus-sis.com<br>
> <br>
> Headquarters Olympus Soft Imaging Solutions GmbH<br>
> Johann-Krane-Weg 39, 48149 Münster, Germany/Deutschland<br>
> <br>
> Registergericht/Register Court: Handelsregister/Commercial Registry
<br>
> Münster, HRB 10405<br>
> Geschäftsführer/Managing Directors: Michael Czempiel (Vors.), Dr.
<br>
> Helmut <br>
> Köhler, Masaaki Yamagishi, Koji Fujio<br>
> <br>
> Diese E-Mail enthält vertrauliche und/oder rechtlich geschützte <br>
> Informationen. Wenn Sie nicht der richtige Adressat sind oder dieses
<br>
> E-Mail irrtümlich erhalten haben, informieren Sie bitte sofort den
<br>
> Absender und vernichten Sie diese Mail. Das unerlaubte Kopieren sowie
<br>
> die <br>
> unbefugte Weitergabe dieser Mail ist nicht gestattet.<br>
> <br>
> This e-mail may contain confidential and/or privileged information.
If <br>
> you <br>
> are not the intended recipient (or have received this e-mail in error)
<br>
> <br>
> please notify the sender immediately and destroy this e-mail. Any
<br>
> unauthorized copying, disclosure or distribution of the material in
<br>
> this <br>
> e-mail is strictly forbidden.<br>
> _______________________________________________<br>
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