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Thanks Curtis<br>
<br>
I was indeed libcurl version problems. Through synaptic/apt-get I had a
mix of libcurl3 and 4 libraries. I got around it by completely removing
libcurl / libcurl-dev etc and downloading libcurl3, libcurl3-dev and
libcurl3-openssl-dev from the packages.ubuntu site. This worked a
treat. <br>
<br>
However.... the perl matlab api part is giving me bother. Again, I've
pasted in the error below and attached the log. <br>
<br>
<br>
Matlab Vers: 7.5.0.338<br>
Matlab Arch: glnx86<br>
Matlab Root: /home/michael/matlabdir<br>
Include: -I/home/michael/matlabdir/extern/include<br>
Lib: -L/home/michael/matlabdir/bin/glnx86 -lmx -leng -lut -lmat
-lustdio -lz<br>
<br>
Installing MATLAB Perl API <br>
\_ Configuring MATLAB lib is -L/home/michael/matlabdir/bin/glnx86
-lmx -leng -lut -lmat -lustdio -lz<br>
[SUCCESS].<br>
\_ Compiling [SUCCESS].<br>
\_ Testing Test Failed.<br>
Perl Matlab API is incorrectly installed.<br>
The MATLAB engine does not start.<br>
[FAILURE].<br>
<br>
<br>
Errors executing task: Tests failed, see MatlabTask.log for details. at
(eval 191) line 1<br>
<br>
at install.pl line 82<br>
main::run_tasks() called at install.pl line 266<br>
# Looks like your test died before it could output anything.<br>
<br>
<br>
Any further hints greatly appreciated.<br>
<br>
Michael<br>
<br>
<br>
Curtis Rueden wrote:
<blockquote
cite="mid:857a86450805281016t2a206662u8f8ddc68c90bf0f0@mail.gmail.com"
type="cite">Hi Michael,<br>
<br>
Not sure if this is the main problem, but according to Google,
CURLOPT_MUTE was removed from curl at least a year and a half ago. So
maybe your curl is too new... or maybe you don't have curl installed at
all? What does "curl --version" tell you?<br>
<br>
-Curtis<br>
<br>
<div class="gmail_quote">On Wed, May 28, 2008 at 11:31 AM, Michael
Porter <<a moz-do-not-send="true" href="mailto:m.porter@dundee.ac.uk">m.porter@dundee.ac.uk</a>>
wrote:<br>
<blockquote class="gmail_quote"
style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">I
have been trying to install OME server on an Ubuntu 8.04 machine with
the source taken off svn this morning. I am completely baffled by an
error and wondered if anyone can help me. All of the dependancies
*appear* to be ok, and all the perl modules pass inspection. I will
paste in the troubled section below and attach the output files
mentioned there.<br>
<br>
Thanks in advance,<br>
<br>
Michael Porter.<br>
<br>
<br>
------------------------<br>
Core Perl Module Setup<br>
------------------------<br>
<br>
(All verbose information logged in
/var/tmp/OME/install/PerlModuleTask.log)<br>
<br>
Installing modules<br>
\_ Configuring [SUCCESS].<br>
\_ Compiling [SUCCESS].<br>
\_ Installing [SUCCESS].<br>
<br>
<br>
Errors loading module: /usr/bin/perl
/usr/share/perl/5.8/ExtUtils/xsubpp -typemap
/usr/share/perl/5.8/ExtUtils/typemap cURL_79e0.xs > cURL_79e0.xsc
&& mv cURL_79e0.xsc cURL_79e0.c<br>
cc -c -I/home/michael/OME -D_REENTRANT -D_GNU_SOURCE
-DTHREADS_HAVE_PIDS -DDEBIAN -fno-strict-aliasing -pipe
-I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2
-DVERSION=\"0.00\" -DXS_VERSION=\"0.00\" -fPIC
"-I/usr/lib/perl/5.8/CORE" cURL_79e0.c<br>
cURL_79e0.xs: In function 'new':<br>
cURL_79e0.xs:26: error: 'CURLOPT_MUTE' undeclared (first use in this
function)<br>
cURL_79e0.xs:26: error: (Each undeclared identifier is reported only
once<br>
cURL_79e0.xs:26: error: for each function it appears in.)<br>
make: *** [cURL_79e0.o] Error 1<br>
<br>
A problem was encountered while attempting to compile and install your
Inline<br>
C code. The command that failed was:<br>
make > out.make 2>&1<br>
<br>
The build directory was:<br>
/OME/Inline/build/OME/Util/cURL_79e0<br>
<br>
To debug the problem, cd to the build directory, and inspect the output
files.<br>
<br>
at /home/michael/OME/src/perl2/OME/Util/cURL.pm line 162<br>
Compilation failed in require at
/home/michael/OME/src/perl2/OME/Install/ApacheConfigTask.pm line 55.<br>
BEGIN failed--compilation aborted at
/home/michael/OME/src/perl2/OME/Install/ApacheConfigTask.pm line 55.<br>
Compilation failed in require at (eval 184) line 3.<br>
<br>
at install.pl line 79<br>
main::run_tasks() called at install.pl line 266<br>
# Looks like your test died before it could output anything.<br>
<br>
<br>
<br>
<br>
-- <br>
Michael Porter<br>
Wellcome Trust Centre for<br>
Gene Regulation and Expression<br>
College of Life Sciences<br>
University of Dundee<br>
Dow Street<br>
Dundee<br>
United Kingdom<br>
DD1 5EH<br>
<br>
+44(0)1382 388142<br>
<a moz-do-not-send="true" href="mailto:m.porter@dundee.ac.uk"
target="_blank">m.porter@dundee.ac.uk</a><br>
<br>
The University of Dundee is a registered Scottish charity, No: SC015096<br>
<br>
<br>
<br>
#include "EXTERN.h"<br>
#include "perl.h"<br>
#include "XSUB.h"<br>
#include "INLINE.h"<br>
<br>
#include <curl/curl.h><br>
#include <curl/easy.h><br>
<br>
static size_t my_curl_write(char *buffer, size_t size,<br>
size_t nitems,
void *response) {<br>
sv_catpvn((SV *)(response), buffer, nitems);<br>
return nitems;<br>
}<br>
<br>
SV *new(char* class)<br>
{<br>
SV *obj_ref, *obj;<br>
CURL *curl = NULL;<br>
<br>
<br>
/* initialize curl */<br>
curl = curl_easy_init();<br>
if (! curl)<br>
croak("Could not initialize cURL");<br>
<br>
curl_easy_setopt(curl, CURLOPT_MUTE, 1);<br>
/* Apache's modsecurity requires a user agent string to be set */<br>
curl_easy_setopt(curl, CURLOPT_USERAGENT, "OME::Util::cURL");<br>
<br>
/* bless it into the class */<br>
obj_ref = newSV(0);<br>
sv_setref_pv(obj_ref, class, (void*) curl);<br>
SvREADONLY_on(obj_ref);<br>
<br>
return (obj_ref);<br>
<br>
}<br>
<br>
<br>
SV *POST (SV *obj, char *url, SV *aref)<br>
{<br>
CURL *curl = (CURL *)( SvIV(SvRV(obj)) );<br>
SV *response=NULL;<br>
struct curl_httppost *post=NULL;<br>
struct curl_httppost *last=NULL;<br>
HV *param=NULL;<br>
I32 retlen=0;<br>
SV *item=NULL, *uploadRef=NULL;<br>
char *name=NULL, *contents=NULL, *uploadName=NULL, *uploadFile=NULL;<br>
size_t uploadSize;<br>
FILE *outfile=NULL;<br>
<br>
if (! curl)<br>
croak("Calling POST on an unblessed reference");<br>
<br>
<br>
/* Check the parameters */<br>
if (! SvROK(aref) || SvTYPE(SvRV(aref))!= SVt_PVHV)<br>
croak("aref is not a HASH reference");<br>
param = (HV*)SvRV(aref);<br>
<br>
/* Iterate over the parameter hash */<br>
hv_iterinit (param);<br>
item = hv_iternextsv(param, &name, &retlen);<br>
while (item) {<br>
if ( strcmp (name,"File") && strcmp
(name,"Pixels") && strcmp (name,"__file") ) {<br>
/* This is not an upload parameter (File or Pixels)*/<br>
contents = SvPV_nolen(item);<br>
curl_formadd(&post, &last,<br>
CURLFORM_COPYNAME, name,<br>
CURLFORM_COPYCONTENTS, contents,
CURLFORM_END);<br>
} else if (! strcmp (name,"__file") ) {<br>
outfile = fopen (SvPV_nolen(item),"w+");<br>
if (!outfile) croak("could not open specified
output file");<br>
} else if ( SvROK(item) ) {<br>
/* File or Pixels with a reference means we upload the
buffer refered to */<br>
uploadName = name;<br>
uploadRef = (SV*) SvRV(item);<br>
} else if ( SvPOK (item) ) {<br>
/* File or Pixels with a scalar means we upload the file
*/<br>
uploadName = name;<br>
uploadFile = SvPV_nolen(item);<br>
}<br>
/* get the next parameter */<br>
item = hv_iternextsv(param, &name, &retlen);<br>
}<br>
<br>
/* Add the file upload at the end */<br>
if (uploadFile) {<br>
curl_formadd(&post, &last,<br>
CURLFORM_COPYNAME, uploadName,<br>
CURLFORM_FILE, uploadFile, CURLFORM_END);<br>
} else if (uploadRef) {<br>
/* upload buffer */<br>
curl_formadd(&post, &last,<br>
CURLFORM_COPYNAME, uploadName,<br>
CURLFORM_BUFFER, "data",<br>
CURLFORM_BUFFERPTR, SvPVX(uploadRef),<br>
CURLFORM_BUFFERLENGTH, SvLEN (uploadRef),<br>
CURLFORM_END);<br>
<br>
}<br>
<br>
/* Set the curl form info */<br>
curl_easy_setopt(curl, CURLOPT_URL, url);<br>
curl_easy_setopt(curl, CURLOPT_HTTPPOST, post);<br>
<br>
/* Make a new SV for our response */<br>
response = newSVpvf("");<br>
<br>
if (! outfile) {<br>
curl_easy_setopt(curl, CURLOPT_WRITEFUNCTION,
my_curl_write);<br>
curl_easy_setopt(curl, CURLOPT_WRITEDATA, response);<br>
} else {<br>
curl_easy_setopt(curl, CURLOPT_WRITEFUNCTION, NULL);<br>
curl_easy_setopt(curl, CURLOPT_WRITEDATA, outfile);<br>
}<br>
curl_easy_perform(curl);<br>
<br>
/* free the post data */<br>
curl_formfree(post);<br>
if (outfile) {<br>
fclose (outfile);<br>
outfile = NULL;<br>
}<br>
return (response);<br>
}<br>
<br>
<br>
<br>
SV *GET (SV *obj, char *url)<br>
{<br>
CURL *curl = (CURL *)( SvIV(SvRV(obj)) );<br>
SV *response=NULL;<br>
<br>
if (! curl)<br>
croak("Calling GET on an unblessed reference");<br>
<br>
/* Set the curl options */<br>
curl_easy_setopt(curl, CURLOPT_URL, url);<br>
curl_easy_setopt(curl, CURLOPT_HTTPGET, 1);<br>
<br>
/* Make a new SV for our response */<br>
response = newSVpvf("");<br>
<br>
curl_easy_setopt(curl, CURLOPT_WRITEFUNCTION, my_curl_write);<br>
curl_easy_setopt(curl, CURLOPT_WRITEDATA, response);<br>
<br>
curl_easy_perform(curl);<br>
<br>
return (response);<br>
}<br>
<br>
<br>
void GET_file (SV *obj, char *url, char *file)<br>
{<br>
CURL *curl = (CURL *)( SvIV(SvRV(obj)) );<br>
SV *response=NULL;<br>
FILE *outfile=NULL;<br>
<br>
<br>
if (! curl)<br>
croak("Calling GET_file on an unblessed reference");<br>
<br>
if ( file && strlen (file) ) {<br>
outfile = fopen (file,"w+");<br>
if (!outfile) croak("could not open specified output
file");<br>
}<br>
<br>
/* Set the curl options */<br>
curl_easy_setopt(curl, CURLOPT_URL, url);<br>
curl_easy_setopt(curl, CURLOPT_HTTPGET, 1);<br>
<br>
curl_easy_setopt(curl, CURLOPT_WRITEFUNCTION, NULL);<br>
curl_easy_setopt(curl, CURLOPT_WRITEDATA, outfile);<br>
<br>
curl_easy_perform(curl);<br>
<br>
/* cleanup */<br>
fclose (outfile);<br>
outfile = NULL;<br>
}<br>
<br>
SV *status (SV *obj)<br>
{<br>
CURL *curl = (CURL *)( SvIV(SvRV(obj)) );<br>
long response_code;<br>
<br>
if (! curl)<br>
croak("Calling status on an unblessed reference");<br>
<br>
curl_easy_getinfo (curl,CURLINFO_HTTP_CODE,&response_code);<br>
return ( newSViv(response_code) );<br>
}<br>
<br>
void DESTROY (SV *obj)<br>
{<br>
CURL *curl = (CURL *)( SvIV(SvRV(obj)) );<br>
if (curl) {<br>
curl_easy_cleanup(curl);<br>
}<br>
}<br>
<br>
<br>
<br>
MODULE = OME::Util::cURL_79e0 PACKAGE = OME::Util::cURL<br>
<br>
PROTOTYPES: DISABLE<br>
<br>
<br>
SV *<br>
new (class)<br>
char * class<br>
<br>
SV *<br>
POST (obj, url, aref)<br>
SV * obj<br>
char * url<br>
SV * aref<br>
<br>
SV *<br>
GET (obj, url)<br>
SV * obj<br>
char * url<br>
<br>
void<br>
GET_file (obj, url, file)<br>
SV * obj<br>
char * url<br>
char * file<br>
PREINIT:<br>
I32* temp;<br>
PPCODE:<br>
temp = PL_markstack_ptr++;<br>
GET_file(obj, url, file);<br>
if (PL_markstack_ptr != temp) {<br>
/* truly void, because dXSARGS not invoked */<br>
PL_markstack_ptr = temp;<br>
XSRETURN_EMPTY; /* return empty stack */<br>
}<br>
/* must have used dXSARGS; list context implied */<br>
return; /* assume stack size is correct */<br>
<br>
SV *<br>
status (obj)<br>
SV * obj<br>
<br>
void<br>
DESTROY (obj)<br>
SV * obj<br>
PREINIT:<br>
I32* temp;<br>
PPCODE:<br>
temp = PL_markstack_ptr++;<br>
DESTROY(obj);<br>
if (PL_markstack_ptr != temp) {<br>
/* truly void, because dXSARGS not invoked */<br>
PL_markstack_ptr = temp;<br>
XSRETURN_EMPTY; /* return empty stack */<br>
}<br>
/* must have used dXSARGS; list context implied */<br>
return; /* assume stack size is correct */<br>
<br>
<br>
/usr/bin/perl /usr/share/perl/5.8/ExtUtils/xsubpp -typemap
/usr/share/perl/5.8/ExtUtils/typemap cURL_79e0.xs > cURL_79e0.xsc
&& mv cURL_79e0.xsc cURL_79e0.c<br>
cc -c -I/home/michael/OME -D_REENTRANT -D_GNU_SOURCE
-DTHREADS_HAVE_PIDS -DDEBIAN -fno-strict-aliasing -pipe
-I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2
-DVERSION=\"0.00\" -DXS_VERSION=\"0.00\" -fPIC
"-I/usr/lib/perl/5.8/CORE" cURL_79e0.c<br>
cURL_79e0.xs: In function 'new':<br>
cURL_79e0.xs:26: error: 'CURLOPT_MUTE' undeclared (first use in this
function)<br>
cURL_79e0.xs:26: error: (Each undeclared identifier is reported only
once<br>
cURL_79e0.xs:26: error: for each function it appears in.)<br>
make: *** [cURL_79e0.o] Error 1<br>
<br>
USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL '<br>
SUCCESS -- OUTPUT: "You can remove all previous versions of OME with
the following command:<br>
perl Makefile.PL uninstall<br>
--------------------------<br>
Removing sym-linked DistributedAnalysisEngineCGI.pl and not caring if
we succeed.<br>
Performing `make clean` in directory
/home/michael/OME/src/perl2/OME/Matlab<br>
make: *** No rule to make target `clean'. Stop.<br>
Checking if your kit is complete...<br>
Warning: the following files are missing in your kit:<br>
OME/Analysis/Engine/Executor.pm<br>
OME/Analysis/Engine/ForkedPerlExecutor.pm<br>
OME/Analysis/Engine/install_worker_node.pl<br>
OME/Analysis/Engine/README.DISTRIBUTED<br>
OME/Analysis/Engine/SimpleWorkerExecutor.pm<br>
OME/Analysis/Engine/UnthreadedPerlExecutor.pm<br>
Please inform the author.<br>
WARNING: libtiff must be installed !<br>
Checking if your kit is complete...<br>
Looks good<br>
Writing Makefile for OME::Image::Pix<br>
Checking if your kit is complete...<br>
Looks good<br>
Writing Makefile for Repacker<br>
Writing Makefile for OME<br>
"<br>
<br>
COMPILING MODULE -- 'make'<br>
SUCCESS -- OUTPUT: "cp OME/Web/DefaultHeaderBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DefaultHeaderBuilder.pm<br>
cp OME/Install/CoreSystemTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/CoreSystemTask.pm<br>
cp OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm<br>
cp OME/LookupTable/Entry.pm
/home/michael/OME/src/perl2/blib/lib/OME/LookupTable/Entry.pm<br>
cp OME/Web/ImageDetailAnnotator.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImageDetailAnnotator.pm<br>
cp OME/Web/CG_Search.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/CG_Search.pm<br>
cp OME/ImportEngine/BMPUtils.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BMPUtils.pm<br>
cp OME/LSID.pm /home/michael/OME/src/perl2/blib/lib/OME/LSID.pm<br>
cp OME/ImportExport/ResolveFiles.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ResolveFiles.pm<br>
cp OME/Matlab/Matlab.xs
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/Matlab.xs<br>
cp OME/Image/LocalPixels.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/LocalPixels.pm<br>
cp OME/Tests/ForkedImageImport.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/ForkedImageImport.pl<br>
cp OME/Analysis/Modules/Classification/WND_CHARM_Trainer.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/WND_CHARM_Trainer.pm<br>
cp OME/SemanticType/Superclass.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Superclass.pm<br>
cp OME/Util/Import.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Import.pm<br>
cp OME/File.pm /home/michael/OME/src/perl2/blib/lib/OME/File.pm<br>
cp OME/Remote/Facades/AnnotationFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/AnnotationFacade.pm<br>
cp OME/ModuleExecution/ParentalOutput.pm
/home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/ParentalOutput.pm<br>
cp OME/Web/Graph/NodeExecutions.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Graph/NodeExecutions.pm<br>
cp OME/Web/CG_Annotator.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/CG_Annotator.pm<br>
cp OME/Web/ImportModules.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImportModules.pm<br>
cp OME/AnalysisChainExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/AnalysisChainExecution.pm<br>
cp OME/SetDB.pm /home/michael/OME/src/perl2/blib/lib/OME/SetDB.pm<br>
cp OME/Image/Pix/t/tinyTest-LE.raw
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest-LE.raw<br>
cp OME/Analysis/Engine/Worker.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/Worker.pm<br>
cp OME/Web/DBObjDetail/__OME_Module.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Module.pm<br>
cp OME/Install/t/RegressionSuite.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/t/RegressionSuite.pm<br>
cp OME/Web/DBObjRender/__OriginalFile.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OriginalFile.pm<br>
cp OME/Install/InstallationTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/InstallationTask.pm<br>
cp OME/Install/PerlModuleTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/PerlModuleTask.pm<br>
cp OME/Remote/Facades/ProjectFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ProjectFacade.pm<br>
cp OME/Web/TemplateManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/TemplateManager.pm<br>
cp OME/Web/ImportImages.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImportImages.pm<br>
cp OME/Dataset.pm /home/michael/OME/src/perl2/blib/lib/OME/Dataset.pm<br>
cp OME/Remote/SerializerXMLRPC.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/SerializerXMLRPC.pm<br>
cp OME/Image/Pixels.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pixels.pm<br>
cp OME/Web/DBObjCreate/OME_Dataset.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/OME_Dataset.pm<br>
cp OME/Web/TableBrowse/FooterBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/TableBrowse/FooterBuilder.pm<br>
cp OME/Web/Logout.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Logout.pm<br>
cp OME/Tasks/ImageTasks.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ImageTasks.pm<br>
cp OME/Remote/Apache2/XMLRPC.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2/XMLRPC.pm<br>
cp OME/AnalysisChain/Link.pm
/home/michael/OME/src/perl2/blib/lib/OME/AnalysisChain/Link.pm<br>
cp OME/Analysis/Handlers/EchoHandler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/EchoHandler.pm<br>
cp OME/Install/t/Environment_deleteTree_Test.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_deleteTree_Test.pm<br>
cp OME/Util/Dev/Templates.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/Templates.pm<br>
cp OME/Web/FindSpots.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/FindSpots.pm<br>
cp OME/Web/ImageAnnotationTable.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationTable.pm<br>
cp OME/Analysis/Handlers/MatlabHandler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/MatlabHandler.pm<br>
cp OME/Install/Util.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/Util.pm<br>
cp OME/SemanticType/Element.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Element.pm<br>
cp OME/Web/Util/Category.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Util/Category.pm<br>
cp OME/Analysis/analyzeCHEX.pl
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/analyzeCHEX.pl<br>
cp OME/ImportEngine/Params.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/Params.pm<br>
cp OME/Remote/DTO/GenericAssembler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/DTO/GenericAssembler.pm<br>
cp OME/Util/Dev.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev.pm<br>
cp OME/Tasks/AEFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/AEFacade.pm<br>
cp SVGcatchMsg.pl /home/michael/OME/src/perl2/blib/lib/SVGcatchMsg.pl<br>
cp OME/Web/DBObjRender/__OME_ModuleExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_ModuleExecution.pm<br>
cp OME/Web/DBObjRender/__BayesNetClassifier.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__BayesNetClassifier.pm<br>
cp OME/Web/DBObjRender/__Probe.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Probe.pm<br>
cp OME/Util/Data/dbAdmin.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Data/dbAdmin.pm<br>
cp OME/Web/Authenticated.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Authenticated.pm<br>
cp OME/ImportEngine/LSMreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/LSMreader.pm<br>
cp OME/Web/GuestMenuBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/GuestMenuBuilder.pm<br>
cp OME/Install/PreInstallTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/PreInstallTask.pm<br>
cp OME/Image/Pix/t/tinyTest-BE.raw
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest-BE.raw<br>
cp OME/Util/ExecuteChain.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/ExecuteChain.pm<br>
cp OME/Web/DBObjRender/__OME_SemanticType_Element.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_SemanticType_Element.pm<br>
cp OME/ViewerPreferences.pm
/home/michael/OME/src/perl2/blib/lib/OME/ViewerPreferences.pm<br>
cp OME/Java/DTOInterface.pm
/home/michael/OME/src/perl2/blib/lib/OME/Java/DTOInterface.pm<br>
cp OME/Util/cURL.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/cURL.pm<br>
cp OME/Web/TableBrowse.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/TableBrowse.pm<br>
cp OME/Web/GeneStageAnnotator.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/GeneStageAnnotator.pm<br>
cp OME/Tests/ExportSession.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/ExportSession.pl<br>
cp OME/Web/TaskProgress.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/TaskProgress.pm<br>
cp OME/ImportEngine/ImportEngine.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/ImportEngine.pm<br>
cp OME/Analysis/Handlers/DefaultLoopHandler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/DefaultLoopHandler.pm<br>
cp OME/Util/Top.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Top.pm<br>
cp OME/Web/ImageAnnotationDetail.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationDetail.pm<br>
cp OME/Module/FormalOutput.pm
/home/michael/OME/src/perl2/blib/lib/OME/Module/FormalOutput.pm<br>
cp OME/Web/DBObjRender/__Fluorofor.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Fluorofor.pm<br>
cp OME/Web/ExecuteChain.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ExecuteChain.pm<br>
cp OME/Web/RunClassifier.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/RunClassifier.pm<br>
cp OME/UserState.pm
/home/michael/OME/src/perl2/blib/lib/OME/UserState.pm<br>
cp OME/ImportExport/HierarchyExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/HierarchyExport.pm<br>
cp OME/ImportExport/HierarchyImport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/HierarchyImport.pm<br>
cp OME/Tasks/ClassifierTasks.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ClassifierTasks.pm<br>
cp OME/Web/XMLFileExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/XMLFileExport.pm<br>
cp OME/Util/Dev/FinishExecute.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/FinishExecute.pm<br>
cp OME/Util/Admin/Configure.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/Configure.pm<br>
cp OME/Web/DBObjDetail/__OME_Dataset.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Dataset.pm<br>
cp OME/Analysis/Modules/Classification/SignatureStitcher.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/SignatureStitcher.pm<br>
cp OME/Web/ImageAnnotationBrowser.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationBrowser.pm<br>
cp OME/ImportExport/DataHistoryImport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/DataHistoryImport.pm<br>
cp OME/ImportExport/Repacker/MANIFEST
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/MANIFEST<br>
cp OME/Image/Pix/libpix.c
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/libpix.c<br>
cp OME/ImportEngine/BMPreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BMPreader.pm<br>
cp OME/Web/DBObjRender/__Objective.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Objective.pm<br>
cp OME/ImportExport/ModuleImport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ModuleImport.pm<br>
cp OME/Analysis/Modules/Tracking/FindSpots.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tracking/FindSpots.pm<br>
cp OME/Util/Dev/Classifier.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/Classifier.pm<br>
cp OME/Analysis/Modules/Tests/PassThrough.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/PassThrough.pm<br>
cp OME/Web/STdoc.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/STdoc.pm<br>
cp OME/Util/Commands.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Commands.pm<br>
cp OME/Web/Wizards/ImportAndAnnotateImages.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Wizards/ImportAndAnnotateImages.pm<br>
cp OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm<br>
cp OME/Analysis/Modules/PPM/Typecast.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Typecast.pm<br>
cp OME/Web/GetGraphics.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/GetGraphics.pm<br>
cp OME/Feature.pm /home/michael/OME/src/perl2/blib/lib/OME/Feature.pm<br>
cp OME/Matlab/Compiled.pm
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/Compiled.pm<br>
cp OME/Install/MaintenanceTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/MaintenanceTask.pm<br>
cp OME/Web/SpreadsheetImporterPrompt.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/SpreadsheetImporterPrompt.pm<br>
cp OME/Web/AccessManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/AccessManager.pm<br>
cp OME/Web/DatasetOnGoogleMaps.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DatasetOnGoogleMaps.pm<br>
cp OME/Analysis/Modules/Tracking/TrackSpots.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tracking/TrackSpots.pm<br>
cp OME/Web/DBObjDetail/__OME_ModuleExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_ModuleExecution.pm<br>
cp OME/Analysis/Modules/Histogram/PlaneHistogram.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Histogram/PlaneHistogram.pm<br>
cp OME/Tasks/ChainManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ChainManager.pm<br>
cp OME/Tasks/AnnotationManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/AnnotationManager.pm<br>
cp OME/Analysis/Modules/PPM/FourierTransform.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/FourierTransform.pm<br>
cp OME/Image/DatasetMap.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/DatasetMap.pm<br>
cp OME/Web/DBObjRender/__OME_SemanticType.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_SemanticType.pm<br>
cp OME/Analysis/Handlers/NoopHandler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/NoopHandler.pm<br>
cp OME/Fork.pm /home/michael/OME/src/perl2/blib/lib/OME/Fork.pm<br>
cp OME/Module/Category.pm
/home/michael/OME/src/perl2/blib/lib/OME/Module/Category.pm<br>
cp OME/ImportExport/DataHistoryExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/DataHistoryExport.pm<br>
cp OME/Tasks/PixelsManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/PixelsManager.pm<br>
cp OME/Tasks/CategoryManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/CategoryManager.pm<br>
cp OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm<br>
cp OME/Analysis/Modules/Tests/FauxSignature.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FauxSignature.pm<br>
cp OME/ImportEngine/GELreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/GELreader.pm<br>
cp OME/Web.pm /home/michael/OME/src/perl2/blib/lib/OME/Web.pm<br>
cp OME/ImportEngine/MetamorphHTDFormat.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/MetamorphHTDFormat.pm<br>
cp OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm<br>
cp OME/Analysis/Engine/FeatureHierarchy.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/FeatureHierarchy.pm<br>
cp OME/Web/DBObjRender.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender.pm<br>
cp OME/DBConnection.pm
/home/michael/OME/src/perl2/blib/lib/OME/DBConnection.pm<br>
cp OME/Install/LibraryTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/LibraryTask.pm<br>
cp OME/Configuration/Variable.pm
/home/michael/OME/src/perl2/blib/lib/OME/Configuration/Variable.pm<br>
cp omeapi.pod /home/michael/OME/src/perl2/blib/lib/omeapi.pod<br>
cp OME/Web/Login.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Login.pm<br>
cp OME/Tasks/HistoryManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/HistoryManager.pm<br>
cp OME/Util/Admin/GroupAdmin.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/GroupAdmin.pm<br>
cp OME/Remote/DTO/ProjectAssembler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/DTO/ProjectAssembler.pm<br>
cp OME/AnalysisChainExecutionUserInputs.pm
/home/michael/OME/src/perl2/blib/lib/OME/AnalysisChainExecutionUserInputs.pm<br>
cp OME/Image/Pix/t/test.t
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/test.t<br>
cp OME/Tasks/LSIDManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/LSIDManager.pm<br>
cp OME/Tasks/AttributeManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/AttributeManager.pm<br>
cp OME/Analysis/Modules/Tests/DatasetSignature.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/DatasetSignature.pm<br>
cp OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm<br>
cp OME/Image/Pix/Changes
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Changes<br>
cp OME/SemanticType/BootstrapRepository.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapRepository.pm<br>
cp OME/Analysis/Modules/ImageClassifier/ComputeFeatures.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ImageClassifier/ComputeFeatures.pm<br>
cp OME/Web/DBObjRender/__Pixels.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Pixels.pm<br>
cp OME/Web/Util/Dataset.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Util/Dataset.pm<br>
cp OME/Web/CG_Display.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/CG_Display.pm<br>
cp OME/ImportEngine/OMETIFFreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/OMETIFFreader.pm<br>
cp OME/ModuleExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution.pm<br>
cp OME/Analysis/Modules/Histogram/StackHistogram.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Histogram/StackHistogram.pm<br>
cp OME/Web/SaveViewerSettings.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/SaveViewerSettings.pm<br>
cp OME/SemanticType/Element/Label.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Element/Label.pm<br>
cp OME/Matlab/Matlab.pm
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/Matlab.pm<br>
cp OME/Install/t/Environment_copyTree_Test1.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test1.pm<br>
cp OME/Remote/Prototypes.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Prototypes.pm<br>
cp OME/Tasks/ModuleTasks.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ModuleTasks.pm<br>
cp OME/Remote/Apache1_99/Transport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache1_99/Transport.pm<br>
cp OME/Analysis/Modules/Tests/FindBounds.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FindBounds.pm<br>
cp OME/Install/t/Environment_scanDir_Test.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_scanDir_Test.pm<br>
cp OME/Tasks/OMEXMLImportExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/OMEXMLImportExport.pm<br>
cp OME/Remote/Facades/XMLUtils.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/XMLUtils.pm<br>
cp OME/Util/Annotate/SpreadsheetWriter.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate/SpreadsheetWriter.pm<br>
cp OME/Install/LDAPConfigTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/LDAPConfigTask.pm<br>
cp OME/ImportExport/ChainExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ChainExport.pm<br>
cp OME/Remote/Apache/XMLRPC.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache/XMLRPC.pm<br>
cp OME/Tests/SOAP-2.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/SOAP-2.pl<br>
cp OME/Task.pm /home/michael/OME/src/perl2/blib/lib/OME/Task.pm<br>
cp OME/ImportEngine/STKreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/STKreader.pm<br>
cp OME/AnalysisChainExecution/NodeExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/AnalysisChainExecution/NodeExecution.pm<br>
cp OME/ImportExport/Repacker/Repacker.xs
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Repacker.xs<br>
cp OME/Web/DBObjDetail/__OME_Image.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Image.pm<br>
cp showENV.pl /home/michael/OME/src/perl2/blib/lib/showENV.pl<br>
cp OME/Remote/Apache1_99.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache1_99.pm<br>
cp OME/Web/VisBio.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/VisBio.pm<br>
cp OME/Web/CG_ConstructTemplate.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/CG_ConstructTemplate.pm<br>
cp OME/Web/Search.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Search.pm<br>
cp OME/Web/DefaultFooterBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DefaultFooterBuilder.pm<br>
cp OME/Web/TableBrowse/HeaderBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/TableBrowse/HeaderBuilder.pm<br>
cp OME/ImportExport/Repacker/README
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/README<br>
cp OME/Web/DBObjRender/__OME_Image.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Image.pm<br>
cp OME/Tasks/ImportManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ImportManager.pm<br>
cp OME/Analysis/Modules/Statistics/StackStatistics.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Statistics/StackStatistics.pm<br>
cp OME/Web/DBObjRender/__SamplePreparation.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__SamplePreparation.pm<br>
cp OME/Web/Ping.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Ping.pm<br>
cp OME/Tasks/ProjectManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ProjectManager.pm<br>
cp OME/Web/Graph/ChainExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Graph/ChainExecution.pm<br>
cp OME/Remote/Facades/ConfigFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ConfigFacade.pm<br>
cp OME/ImportEngine/BioradReader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BioradReader.pm<br>
cp OME/Web/UploadImage.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/UploadImage.pm<br>
cp OME/ImportExport/SemanticTypeImport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/SemanticTypeImport.pm<br>
cp OME/Tasks/ImageManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ImageManager.pm<br>
cp OME/Web/DBObjDetail/__CategoryGroup.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__CategoryGroup.pm<br>
cp OME/Analysis/Modules/ROI/ImageROI.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/ImageROI.pm<br>
cp OME/Tasks/MultipleSTAnnotationManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/MultipleSTAnnotationManager.pm<br>
cp OME/Web/Search/Experimenter.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Search/Experimenter.pm<br>
cp OME/ImportExport/ChainImport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ChainImport.pm<br>
cp OME/Web/DBObjCreate.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate.pm<br>
cp OME/Web/DefaultMenuBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DefaultMenuBuilder.pm<br>
cp OME/Web/TrainClassifier.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/TrainClassifier.pm<br>
cp OME/ModuleExecution/SemanticTypeOutput.pm
/home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/SemanticTypeOutput.pm<br>
cp OME/Analysis/Handlers/CLIHandler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/CLIHandler.pm<br>
cp OME/Image/Pix/typemap
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/typemap<br>
cp OME/LookupTable.pm
/home/michael/OME/src/perl2/blib/lib/OME/LookupTable.pm<br>
cp OME/Analysis/Engine/DistributedAnalysisEngineClient.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/DistributedAnalysisEngineClient.pm<br>
cp OME/Util/Annotate.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate.pm<br>
cp OME/SemanticType/BootstrapGroup.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapGroup.pm<br>
cp OME/Configuration.pm
/home/michael/OME/src/perl2/blib/lib/OME/Configuration.pm<br>
cp OME/Factory.pm /home/michael/OME/src/perl2/blib/lib/OME/Factory.pm<br>
cp OME/Analysis/Modules/PPM/Gradient.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Gradient.pm<br>
cp OME/SemanticType/BootstrapExperimenterGroup.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapExperimenterGroup.pm<br>
cp OME/ImportExport/SemanticTypeExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/SemanticTypeExport.pm<br>
cp OME/ImportEngine/AbstractFormat.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/AbstractFormat.pm<br>
cp OME/Matlab/Makefile.PL
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/Makefile.PL<br>
cp OME/AnalysisChain/Node.pm
/home/michael/OME/src/perl2/blib/lib/OME/AnalysisChain/Node.pm<br>
cp OME/ImportEngine/DICOM.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DICOM.pm<br>
cp OME/Web/DBObjRender/__ExternalLink.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__ExternalLink.pm<br>
cp OME/Web/DBObjRender/__Instrument.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Instrument.pm<br>
cp OME/Analysis/Modules/ROI/Image2DTiledROIs.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/Image2DTiledROIs.pm<br>
cp OME/SemanticType.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType.pm<br>
cp OME/Web/DBObjRender/__OME_Task.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Task.pm<br>
cp OME/Remote/Apache2/Transport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2/Transport.pm<br>
cp OME/Remote.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote.pm<br>
cp OME/Tasks/NotificationManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/NotificationManager.pm<br>
cp OME/ImportExport/Repacker/Makefile.PL
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Makefile.PL<br>
cp OME/Matlab/test.pl
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/test.pl<br>
cp OME/Remote/Apache/HTTPProxy.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache/HTTPProxy.pm<br>
cp OME/Remote/Facades/DatasetFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/DatasetFacade.pm<br>
cp OME/Java/SemanticTypeInterface.pm
/home/michael/OME/src/perl2/blib/lib/OME/Java/SemanticTypeInterface.pm<br>
cp OME/Install/ApacheConfigTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/ApacheConfigTask.pm<br>
cp OME/Web/DBObjRender/__OME_DataTable_Column.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_DataTable_Column.pm<br>
cp OME/Tasks/DatasetManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/DatasetManager.pm<br>
cp OME/Install/t/Environment_copyTree_Test2.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test2.pm<br>
cp OME/Web/Home.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Home.pm<br>
cp OME/Matlab/MANIFEST
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/MANIFEST<br>
cp OME/ImportEngine/XMLreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/XMLreader.pm<br>
cp OME/Util/Dev/Lint.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/Lint.pm<br>
cp OME/Database/Delegate.pm
/home/michael/OME/src/perl2/blib/lib/OME/Database/Delegate.pm<br>
cp OME/Web/Search/OME_ModuleExecution.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Search/OME_ModuleExecution.pm<br>
cp OME/DataTable/Column.pm
/home/michael/OME/src/perl2/blib/lib/OME/DataTable/Column.pm<br>
cp OME/ImportExport/Repacker/Repacker.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Repacker.pm<br>
cp OME/ModuleExecution/VirtualMEXMap.pm
/home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/VirtualMEXMap.pm<br>
cp OME/Util/Admin/Uninstall.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/Uninstall.pm<br>
cp OME/Analysis/Modules/Tests/ImageSignature.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/ImageSignature.pm<br>
cp OME/Install/MatlabTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/MatlabTask.pm<br>
cp OME/ImportExport/Repacker/Changes
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Changes<br>
cp OME/Analysis/Modules/Statistics/PlaneStatistics.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Statistics/PlaneStatistics.pm<br>
cp OME/ImportExport/Repacker/test.pl
/home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/test.pl<br>
cp OME/Web/MultiObjCreate.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/MultiObjCreate.pm<br>
cp OME/Remote/Facades/ChainRetrievalFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ChainRetrievalFacade.pm<br>
cp OME/Image.pm /home/michael/OME/src/perl2/blib/lib/OME/Image.pm<br>
cp OME/Tasks/OMEExport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/OMEExport.pm<br>
cp OME/Web/ImportFiles.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/ImportFiles.pm<br>
cp OME/Install/Environment.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/Environment.pm<br>
cp OME/ImportEngine/DICOMconstants.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DICOMconstants.pm<br>
cp OME/Remote/Facades/ImportFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ImportFacade.pm<br>
cp OME/Remote/Facades/SessionFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/SessionFacade.pm<br>
cp OME/Install/t/Environment_copyTree_Test3.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test3.pm<br>
cp OME/Module.pm /home/michael/OME/src/perl2/blib/lib/OME/Module.pm<br>
cp OME/AnalysisChain.pm
/home/michael/OME/src/perl2/blib/lib/OME/AnalysisChain.pm<br>
cp OME/Remote/DTO.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/DTO.pm<br>
cp OME/Web/GuestHeaderBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/GuestHeaderBuilder.pm<br>
cp OME/Web/Search/OME_Project.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/Search/OME_Project.pm<br>
cp OME/ImportEngine/BioFormats.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BioFormats.pm<br>
cp OME/Project.pm /home/michael/OME/src/perl2/blib/lib/OME/Project.pm<br>
cp OME/Util/Annotate/SpreadsheetReader.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate/SpreadsheetReader.pm<br>
cp OME/Install/CoreDatabaseTablesTask.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/CoreDatabaseTablesTask.pm<br>
cp OME/Image/Pix/libpix.h
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/libpix.h<br>
cp OME/Image/Pix/MANIFEST
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/MANIFEST<br>
cp OME/Remote/Apache2/HTTPProxy.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2/HTTPProxy.pm<br>
cp OME/ImportEngine/TIFFreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/TIFFreader.pm<br>
cp OME/Matlab/CompilationREADME
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/CompilationREADME<br>
cp OME/SemanticType/Label.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Label.pm<br>
cp OME/Web/DBObjRender/__DevelopmentalStage.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__DevelopmentalStage.pm<br>
cp OME/Matlab/compileDynamicLibraries.pl
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/compileDynamicLibraries.pl<br>
cp OME/Web/DBObjCreate/Category.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/Category.pm<br>
cp OME/Analysis/Engine/Job.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/Job.pm<br>
cp OME/Analysis/Engine/DistributedAnalysisEngineCGI.pl
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/DistributedAnalysisEngineCGI.pl<br>
cp OME/Tests/XMLRPC.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/XMLRPC.pl<br>
cp OME/Remote/Apache/Transport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache/Transport.pm<br>
cp OME/Install/Terminal.pm
/home/michael/OME/src/perl2/blib/lib/OME/Install/Terminal.pm<br>
cp serve.pl /home/michael/OME/src/perl2/blib/lib/serve.pl<br>
cp OME/Tasks/SemanticTypeManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/SemanticTypeManager.pm<br>
cp OME/Analysis/Engine.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine.pm<br>
cp OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm<br>
cp OME/Remote/Facades/AnalysisFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/AnalysisFacade.pm<br>
cp OME/Tests/LDAPtest.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/LDAPtest.pl<br>
cp OME/DataTable.pm
/home/michael/OME/src/perl2/blib/lib/OME/DataTable.pm<br>
cp OME/Project/DatasetMap.pm
/home/michael/OME/src/perl2/blib/lib/OME/Project/DatasetMap.pm<br>
cp OME/Util/Annotate/AnnotationWizards.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate/AnnotationWizards.pm<br>
cp OME/Util/Data/Delete.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Data/Delete.pm<br>
cp OME/Web/DBObjRender/__Experimenter.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Experimenter.pm<br>
cp OME/SessionManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/SessionManager.pm<br>
cp OME/Analysis/Modules/ROI/Image2DROIs.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/Image2DROIs.pm<br>
cp OME/Analysis/Modules/Classification/WND_CHARM_Prediction.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/WND_CHARM_Prediction.pm<br>
cp OME/Util/OMECommander.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/OMECommander.pm<br>
cp OME/Remote/Apache2.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2.pm<br>
cp OME/Tasks/OMEImport.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/OMEImport.pm<br>
cp OME/Remote/Facades/HistoryFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/HistoryFacade.pm<br>
cp OME/ImportEngine/DICOMreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DICOMreader.pm<br>
cp OME/Web/DBObjDetail.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail.pm<br>
cp OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl<br>
cp OME/Web/DBObjRender/__OME_DataTable.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_DataTable.pm<br>
cp OME/Tests/SOAP.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/SOAP.pl<br>
cp OME/Remote/Apache.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache.pm<br>
cp OME/Image/Server.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/Server.pm<br>
cp OME/Analysis/Modules/Tests/FindRatio.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FindRatio.pm<br>
cp OME/Web/GuestFooterBuilder.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/GuestFooterBuilder.pm<br>
cp OME/Web/DBObjTable.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjTable.pm<br>
cp OME/Image/Pix/Pix.xs
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Pix.xs<br>
cp OME/Analysis/Analysis_System_Notes.txt
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Analysis_System_Notes.txt<br>
cp OME/Matlab/writeLibraryPackage.pl
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/writeLibraryPackage.pl<br>
cp OME/Web/MultiObjCreate/ExperimentProtocol.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/MultiObjCreate/ExperimentProtocol.pm<br>
cp OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm<br>
cp OME/Matlab/Changes
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/Changes<br>
cp OME/Util/Dev/<a moz-do-not-send="true" href="http://wnd.pm"
target="_blank">wnd.pm</a>
/home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/<a
moz-do-not-send="true" href="http://wnd.pm" target="_blank">wnd.pm</a><br>
cp OME/Util/Admin/UserAdmin.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/UserAdmin.pm<br>
cp OME/Java/omejava
/home/michael/OME/src/perl2/blib/lib/OME/Java/omejava<br>
cp OME/Web/DBObjRender/__Husbandry.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Husbandry.pm<br>
cp OME/Image/Server/Pixels.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/Server/Pixels.pm<br>
cp OME/Tests/InteractiveSOAP.pl
/home/michael/OME/src/perl2/blib/lib/OME/Tests/InteractiveSOAP.pl<br>
cp OME/ModuleExecution/ActualInput.pm
/home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/ActualInput.pm<br>
cp OME/Web/DBObjRender/__Category.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Category.pm<br>
cp OME/LocalFile.pm
/home/michael/OME/src/perl2/blib/lib/OME/LocalFile.pm<br>
cp OME/Remote/RPC2.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/RPC2.pm<br>
cp OME/Tasks/ModuleExecutionManager.pm
/home/michael/OME/src/perl2/blib/lib/OME/Tasks/ModuleExecutionManager.pm<br>
cp OME/Matlab/typemap
/home/michael/OME/src/perl2/blib/lib/OME/Matlab/typemap<br>
cp OME/SemanticType/BootstrapExperimenter.pm
/home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapExperimenter.pm<br>
cp OME/Web/DBObjRender/__OME_Dataset.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Dataset.pm<br>
cp OME/ImportEngine/TIFFUtils.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/TIFFUtils.pm<br>
cp OME/Web/FileTable.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/FileTable.pm<br>
cp OME/Image/Pix/t/tinyTest.d3d.dv
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest.d3d.dv<br>
cp OME/Util/Admin/OMEAdmin.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/OMEAdmin.pm<br>
cp LogService.pl /home/michael/OME/src/perl2/blib/lib/LogService.pl<br>
cp OME/Remote/Facades/GenericFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/GenericFacade.pm<br>
cp OME.pm /home/michael/OME/src/perl2/blib/lib/OME.pm<br>
cp OME/Analysis/Handler.pm
/home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handler.pm<br>
cp OME/Module/FormalInput.pm
/home/michael/OME/src/perl2/blib/lib/OME/Module/FormalInput.pm<br>
cp OME/Remote/Facades/ModuleExecutionFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ModuleExecutionFacade.pm<br>
cp OME/Web/DBObjDetail/__OME_Project.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Project.pm<br>
cp omemodules.pod /home/michael/OME/src/perl2/blib/lib/omemodules.pod<br>
cp OME-startup.pl /home/michael/OME/src/perl2/blib/lib/OME-startup.pl<br>
cp OME/Remote/Facade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facade.pm<br>
cp OME/Session.pm /home/michael/OME/src/perl2/blib/lib/OME/Session.pm<br>
cp OME/Remote/Apache1_99/HTTPProxy.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache1_99/HTTPProxy.pm<br>
cp OME/Database/PostgresDelegate.pm
/home/michael/OME/src/perl2/blib/lib/OME/Database/PostgresDelegate.pm<br>
cp OME/Remote/DeserializerXMLRPC.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/DeserializerXMLRPC.pm<br>
cp OME/Image/Pix/Pix.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Pix.pm<br>
cp OME/Util/Dev/ChainStats.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/ChainStats.pm<br>
cp newdevelopers.pod
/home/michael/OME/src/perl2/blib/lib/newdevelopers.pod<br>
cp OME/DBObject.pm /home/michael/OME/src/perl2/blib/lib/OME/DBObject.pm<br>
cp OME/Remote/Facades/ModuleRetrievalFacade.pm
/home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ModuleRetrievalFacade.pm<br>
cp OME/Util/Data/Export.pm
/home/michael/OME/src/perl2/blib/lib/OME/Util/Data/Export.pm<br>
cp OME/Web/DBObjCreate/OME_Project.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/OME_Project.pm<br>
cp OME/Image/Server/File.pm
/home/michael/OME/src/perl2/blib/lib/OME/Image/Server/File.pm<br>
cp OME/ImportEngine/DVreader.pm
/home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DVreader.pm<br>
cp OME/Web/DBObjDetail/__Category.pm
/home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__Category.pm<br>
cp OME/Image/Pix/Makefile.PL
/home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Makefile.PL<br>
make[1]: Entering directory `/home/michael/OME/src/perl2/OME/Image/Pix'<br>
cp Pix.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix.pm<br>
/usr/bin/perl /usr/share/perl/5.8.8/ExtUtils/xsubpp -typemap
/usr/share/perl/5.8/ExtUtils/typemap -typemap typemap Pix.xs >
Pix.xsc && mv Pix.xsc Pix.c<br>
cc -c -I/sw/include -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS
-DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"2.007\"
-DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl/5.8/CORE" Pix.c<br>
cc -c -I/sw/include -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS
-DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"2.007\"
-DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl/5.8/CORE" libpix.c<br>
Running Mkbootstrap for OME::Image::Pix ()<br>
chmod 644 Pix.bs<br>
rm -f /home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so<br>
cc -shared -L/usr/local/lib Pix.o libpix.o -o
/home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so \<br>
-L/usr/local/lib -ltiff \<br>
<br>
chmod 755
/home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so<br>
cp Pix.bs
/home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.bs<br>
chmod 644
/home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.bs<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Pix.3pm<br>
make[1]: Leaving directory `/home/michael/OME/src/perl2/OME/Image/Pix'<br>
make[1]: Entering directory
`/home/michael/OME/src/perl2/OME/ImportExport/Repacker'<br>
cp Repacker.pm /home/michael/OME/src/perl2/blib/lib/Repacker.pm<br>
/usr/bin/perl /usr/share/perl/5.8.8/ExtUtils/xsubpp -typemap
/usr/share/perl/5.8/ExtUtils/typemap Repacker.xs > Repacker.xsc
&& mv Repacker.xsc Repacker.c<br>
cc -c -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBIAN
-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\"
-fPIC "-I/usr/lib/perl/5.8/CORE" Repacker.c<br>
Running Mkbootstrap for Repacker ()<br>
chmod 644 Repacker.bs<br>
rm -f /home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so<br>
cc -shared -L/usr/local/lib Repacker.o -o
/home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so \<br>
\<br>
<br>
chmod 755
/home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so<br>
cp Repacker.bs
/home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.bs<br>
chmod 644
/home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.bs<br>
Manifying /home/michael/OME/src/perl2/blib/man3/Repacker.3pm<br>
make[1]: Leaving directory
`/home/michael/OME/src/perl2/OME/ImportExport/Repacker'<br>
cp OME/Java/omejava /home/michael/OME/src/perl2/blib/script/omejava<br>
/usr/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)"
/home/michael/OME/src/perl2/blib/script/omejava<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache::XMLRPC.3pm<br>
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Manifying /home/michael/OME/src/perl2/blib/man3/OME::Task.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::STKreader.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::ImageDetailAnnotator.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::AnalysisChainExecution::NodeExecution.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Image.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::LSID.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::BMPUtils.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::ResolveFiles.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Image::LocalPixels.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache1_99.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Superclass.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Import.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::AnnotationFacade.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::ParentalOutput.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_Image.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::AnalysisChainExecution.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ImportManager.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__SamplePreparation.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Module.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ProjectManager.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::BioradReader.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ConfigFacade.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OriginalFile.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ProjectFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::SemanticTypeImport.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::TemplateManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ImageManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__CategoryGroup.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::ROI::ImageROI.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::MultipleSTAnnotationManager.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Dataset.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::Search::Experimenter.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::SerializerXMLRPC.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::SemanticTypeOutput.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::DistributedAnalysisEngineClient.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Pixels.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate::OME_Dataset.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapGroup.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Configuration.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ImageTasks.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache2::XMLRPC.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::AnalysisChain::Link.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Factory.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::Gradient.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapExperimenterGroup.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::AbstractFormat.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::ImageAnnotationTable.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handlers::MatlabHandler.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Instrument.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Element.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::Util::Category.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::ROI::Image2DTiledROIs.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Remote::DTO::GenericAssembler.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::Params.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_Task.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Dev.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::NotificationManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::AEFacade.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::DatasetFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Java::SemanticTypeInterface.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_ModuleExecution.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__BayesNetClassifier.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_DataTable_Column.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::DatasetManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Probe.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Home.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::<a class="moz-txt-link-freetext" href="Data::dbAdmin.3pm">Data::dbAdmin.3pm</a><br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::LSMreader.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::Authenticated.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Database::Delegate.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::Search::OME_ModuleExecution.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::DataTable::Column.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::Repacker::Repacker.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_SemanticType_Element.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Java::DTOInterface.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::VirtualMEXMap.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::Uninstall.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Statistics::PlaneStatistics.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::cURL.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ChainRetrievalFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::MultiObjCreate.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::GeneStageAnnotator.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::OMEExport.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ImportFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::ImportEngine.3pm<br>
MOME/ImportExport/HierarchyExport.pm:139: Unknown escape E<not><br>
OME/Web/ImageAnnotationBrowser.pm:387: Unknown command paragraph
"=head getDimLayoutCode"<br>
OME/Web/ImageAnnotationBrowser.pm:704: Unknown command paragraph
"=head copyArray<br>
generate a copy of a 1-d array<br>
=cut"<br>
OME/SessionManager.pm:244: Unknown command paragraph "=sub
promptAndLogin"<br>
anifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::SessionFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handlers::DefaultLoopHandler.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Module.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChain.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::DTO.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::ImageAnnotationDetail.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Fluorofor.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::UserState.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::HierarchyExport.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::Search::OME_Project.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::HierarchyImport.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ClassifierTasks.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::Configure.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Project.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate::SpreadsheetReader.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Dataset.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::SignatureStitcher.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::ImageAnnotationBrowser.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::BMPreader.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::TIFFreader.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Label.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Objective.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::ModuleImport.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__DevelopmentalStage.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate::Category.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::Job.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::DistributedAnalysisEngineCGI.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Commands.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::ML_BayesNet_Trainer.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::SemanticTypeManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::AnalysisFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChainExecution_NodeExecution.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Feature.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::GetGraphics.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::Typecast.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::DataTable.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate::AnnotationWizards.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Experimenter.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DatasetOnGoogleMaps.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::AccessManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::WND_CHARM_Prediction.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::ROI::Image2DROIs.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::SessionManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::OMEImport.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache2.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::OMECommander.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::DICOMreader.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::HisOME/Web/DBObjRender.pm:615:
Unknown command paragraph "=Head2 renderData"<br>
OME/Web/DBObjRender.pm:1130: Unknown command paragraph "=Head2
_getLSIDmanager"<br>
toryFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_ModuleExecution.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Histogram::PlaneHistogram.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::NonblockingSlaveWorkerCGI.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ChainManager.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_DataTable.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::AnnotationManager.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::FourierTransform.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Server.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_SemanticType.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handlers::NoopHandler.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Fork.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjTable.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ImportExport::DataHistoryExport.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::PixelsManager.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::CategoryManager.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::Typecast2DerivedPixels.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::ML_BayesNet_Classifier.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::MultiObjCreate::ExperimentProtocol.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::GELreader.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::UserAdmin.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Image::Server::Pixels.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Husbandry.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChainExecution.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::FeatureHierarchy.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::ActualInput.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Category.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::LocalFile.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ModuleExecutionManager.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::RPC2.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Configuration::Variable.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapExperimenter.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/omeapi.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_Dataset.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::TIFFUtils.3pm<br>
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/home/michael/OME/src/perl2/blib/man3/OME::Tasks::HistoryManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::GroupAdmin.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::DTO::ProjectAssembler.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::OMEAdmin.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::AnalysisChainExecutionUserInputs.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::LSIDManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::AttributeManager.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChain_Node.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::GenericFacade.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapRepository.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Pixels.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handler.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::Util::Dataset.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ModuleExecutionFacade.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Histogram::StackHistogram.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/omemodules.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Project.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Element::Label.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facade.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Matlab::Matlab.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::Session.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Database::PostgresDelegate.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::DeserializerXMLRPC.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Prototypes.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Image::Pix::Pix.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::ModuleTasks.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/newdevelopers.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ModuleRetrievalFacade.3pm<br>
Manifying /home/michael/OME/src/perl2/blib/man3/OME::DBObject.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate::OME_Project.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::DVreader.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Image::Server::File.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Tasks::OMEXMLImportExport.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::XMLUtils.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate::SpreadsheetWriter.3pm<br>
Manifying
/home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__Category.3pm<br>
"<br>
<br>
INSTALLING MODULE -- 'make install'<br>
SUCCESS -- OUTPUT: "make[1]: Entering directory
`/home/michael/OME/src/perl2/OME/Image/Pix'<br>
make[1]: Leaving directory `/home/michael/OME/src/perl2/OME/Image/Pix'<br>
make[1]: Entering directory
`/home/michael/OME/src/perl2/OME/ImportExport/Repacker'<br>
make[1]: Leaving directory
`/home/michael/OME/src/perl2/OME/ImportExport/Repacker'<br>
Writing /usr/local/lib/perl/5.8.8/auto/OME/.packlist<br>
Appending installation info to /usr/local/lib/perl/5.8.8/perllocal.pod<br>
"<br>
<br>
<br>
_______________________________________________<br>
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href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a><br>
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href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel"
target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><br>
<br>
</blockquote>
</div>
<br>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Michael Porter
Wellcome Trust Centre for
Gene Regulation and Expression
College of Life Sciences
University of Dundee
Dow Street
Dundee
United Kingdom
DD1 5EH
+44(0)1382 388142
<a class="moz-txt-link-abbreviated" href="mailto:m.porter@dundee.ac.uk">m.porter@dundee.ac.uk</a>
The University of Dundee is a registered Scottish charity, No: SC015096
</pre>
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