USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL ' SUCCESS -- OUTPUT: "You can remove all previous versions of OME with the following command: perl Makefile.PL uninstall -------------------------- Removing sym-linked DistributedAnalysisEngineCGI.pl and not caring if we succeed. Performing `make clean` in directory /home/michael/OME/src/perl2/OME/Matlab make: *** No rule to make target `clean'. Stop. Checking if your kit is complete... Warning: the following files are missing in your kit: OME/Analysis/Engine/Executor.pm OME/Analysis/Engine/ForkedPerlExecutor.pm OME/Analysis/Engine/install_worker_node.pl OME/Analysis/Engine/README.DISTRIBUTED OME/Analysis/Engine/SimpleWorkerExecutor.pm OME/Analysis/Engine/UnthreadedPerlExecutor.pm Please inform the author. WARNING: libtiff must be installed ! Checking if your kit is complete... Looks good Writing Makefile for OME::Image::Pix Checking if your kit is complete... Looks good Writing Makefile for Repacker Writing Makefile for OME " COMPILING MODULE -- 'make' SUCCESS -- OUTPUT: "cp OME/Web/DefaultHeaderBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DefaultHeaderBuilder.pm cp OME/Install/CoreSystemTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/CoreSystemTask.pm cp OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm cp OME/LookupTable/Entry.pm /home/michael/OME/src/perl2/blib/lib/OME/LookupTable/Entry.pm cp OME/Web/ImageDetailAnnotator.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImageDetailAnnotator.pm cp OME/Web/CG_Search.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/CG_Search.pm cp OME/ImportEngine/BMPUtils.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BMPUtils.pm cp OME/LSID.pm /home/michael/OME/src/perl2/blib/lib/OME/LSID.pm cp OME/ImportExport/ResolveFiles.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ResolveFiles.pm cp OME/Matlab/Matlab.xs /home/michael/OME/src/perl2/blib/lib/OME/Matlab/Matlab.xs cp OME/Image/LocalPixels.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/LocalPixels.pm cp OME/Tests/ForkedImageImport.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/ForkedImageImport.pl cp OME/Analysis/Modules/Classification/WND_CHARM_Trainer.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/WND_CHARM_Trainer.pm cp OME/SemanticType/Superclass.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Superclass.pm cp OME/Util/Import.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Import.pm cp OME/File.pm /home/michael/OME/src/perl2/blib/lib/OME/File.pm cp OME/Remote/Facades/AnnotationFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/AnnotationFacade.pm cp OME/ModuleExecution/ParentalOutput.pm /home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/ParentalOutput.pm cp OME/Web/Graph/NodeExecutions.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Graph/NodeExecutions.pm cp OME/Web/CG_Annotator.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/CG_Annotator.pm cp OME/Web/ImportModules.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImportModules.pm cp OME/AnalysisChainExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/AnalysisChainExecution.pm cp OME/SetDB.pm /home/michael/OME/src/perl2/blib/lib/OME/SetDB.pm cp OME/Image/Pix/t/tinyTest-LE.raw /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest-LE.raw cp OME/Analysis/Engine/Worker.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/Worker.pm cp OME/Web/DBObjDetail/__OME_Module.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Module.pm cp OME/Install/t/RegressionSuite.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/t/RegressionSuite.pm cp OME/Web/DBObjRender/__OriginalFile.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OriginalFile.pm cp OME/Install/InstallationTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/InstallationTask.pm cp OME/Install/PerlModuleTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/PerlModuleTask.pm cp OME/Remote/Facades/ProjectFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ProjectFacade.pm cp OME/Web/TemplateManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/TemplateManager.pm cp OME/Web/ImportImages.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImportImages.pm cp OME/Dataset.pm /home/michael/OME/src/perl2/blib/lib/OME/Dataset.pm cp OME/Remote/SerializerXMLRPC.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/SerializerXMLRPC.pm cp OME/Image/Pixels.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Pixels.pm cp OME/Web/DBObjCreate/OME_Dataset.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/OME_Dataset.pm cp OME/Web/TableBrowse/FooterBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/TableBrowse/FooterBuilder.pm cp OME/Web/Logout.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Logout.pm cp OME/Tasks/ImageTasks.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ImageTasks.pm cp OME/Remote/Apache2/XMLRPC.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2/XMLRPC.pm cp OME/AnalysisChain/Link.pm /home/michael/OME/src/perl2/blib/lib/OME/AnalysisChain/Link.pm cp OME/Analysis/Handlers/EchoHandler.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/EchoHandler.pm cp OME/Install/t/Environment_deleteTree_Test.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_deleteTree_Test.pm cp OME/Util/Dev/Templates.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/Templates.pm cp OME/Web/FindSpots.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/FindSpots.pm cp OME/Web/ImageAnnotationTable.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationTable.pm cp OME/Analysis/Handlers/MatlabHandler.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/MatlabHandler.pm cp OME/Install/Util.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/Util.pm cp OME/SemanticType/Element.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Element.pm cp OME/Web/Util/Category.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Util/Category.pm cp OME/Analysis/analyzeCHEX.pl /home/michael/OME/src/perl2/blib/lib/OME/Analysis/analyzeCHEX.pl cp OME/ImportEngine/Params.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/Params.pm cp OME/Remote/DTO/GenericAssembler.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/DTO/GenericAssembler.pm cp OME/Util/Dev.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev.pm cp OME/Tasks/AEFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/AEFacade.pm cp SVGcatchMsg.pl /home/michael/OME/src/perl2/blib/lib/SVGcatchMsg.pl cp OME/Web/DBObjRender/__OME_ModuleExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_ModuleExecution.pm cp OME/Web/DBObjRender/__BayesNetClassifier.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__BayesNetClassifier.pm cp OME/Web/DBObjRender/__Probe.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Probe.pm cp OME/Util/Data/dbAdmin.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Data/dbAdmin.pm cp OME/Web/Authenticated.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Authenticated.pm cp OME/ImportEngine/LSMreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/LSMreader.pm cp OME/Web/GuestMenuBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/GuestMenuBuilder.pm cp OME/Install/PreInstallTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/PreInstallTask.pm cp OME/Image/Pix/t/tinyTest-BE.raw /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest-BE.raw cp OME/Util/ExecuteChain.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/ExecuteChain.pm cp OME/Web/DBObjRender/__OME_SemanticType_Element.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_SemanticType_Element.pm cp OME/ViewerPreferences.pm /home/michael/OME/src/perl2/blib/lib/OME/ViewerPreferences.pm cp OME/Java/DTOInterface.pm /home/michael/OME/src/perl2/blib/lib/OME/Java/DTOInterface.pm cp OME/Util/cURL.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/cURL.pm cp OME/Web/TableBrowse.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/TableBrowse.pm cp OME/Web/GeneStageAnnotator.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/GeneStageAnnotator.pm cp OME/Tests/ExportSession.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/ExportSession.pl cp OME/Web/TaskProgress.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/TaskProgress.pm cp OME/ImportEngine/ImportEngine.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/ImportEngine.pm cp OME/Analysis/Handlers/DefaultLoopHandler.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/DefaultLoopHandler.pm cp OME/Util/Top.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Top.pm cp OME/Web/ImageAnnotationDetail.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationDetail.pm cp OME/Module/FormalOutput.pm /home/michael/OME/src/perl2/blib/lib/OME/Module/FormalOutput.pm cp OME/Web/DBObjRender/__Fluorofor.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Fluorofor.pm cp OME/Web/ExecuteChain.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ExecuteChain.pm cp OME/Web/RunClassifier.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/RunClassifier.pm cp OME/UserState.pm /home/michael/OME/src/perl2/blib/lib/OME/UserState.pm cp OME/ImportExport/HierarchyExport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/HierarchyExport.pm cp OME/ImportExport/HierarchyImport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/HierarchyImport.pm cp OME/Tasks/ClassifierTasks.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ClassifierTasks.pm cp OME/Web/XMLFileExport.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/XMLFileExport.pm cp OME/Util/Dev/FinishExecute.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/FinishExecute.pm cp OME/Util/Admin/Configure.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/Configure.pm cp OME/Web/DBObjDetail/__OME_Dataset.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Dataset.pm cp OME/Analysis/Modules/Classification/SignatureStitcher.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/SignatureStitcher.pm cp OME/Web/ImageAnnotationBrowser.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationBrowser.pm cp OME/ImportExport/DataHistoryImport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/DataHistoryImport.pm cp OME/ImportExport/Repacker/MANIFEST /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/MANIFEST cp OME/Image/Pix/libpix.c /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/libpix.c cp OME/ImportEngine/BMPreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BMPreader.pm cp OME/Web/DBObjRender/__Objective.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Objective.pm cp OME/ImportExport/ModuleImport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ModuleImport.pm cp OME/Analysis/Modules/Tracking/FindSpots.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tracking/FindSpots.pm cp OME/Util/Dev/Classifier.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/Classifier.pm cp OME/Analysis/Modules/Tests/PassThrough.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/PassThrough.pm cp OME/Web/STdoc.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/STdoc.pm cp OME/Util/Commands.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Commands.pm cp OME/Web/Wizards/ImportAndAnnotateImages.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Wizards/ImportAndAnnotateImages.pm cp OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm cp OME/Analysis/Modules/PPM/Typecast.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Typecast.pm cp OME/Web/GetGraphics.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/GetGraphics.pm cp OME/Feature.pm /home/michael/OME/src/perl2/blib/lib/OME/Feature.pm cp OME/Matlab/Compiled.pm /home/michael/OME/src/perl2/blib/lib/OME/Matlab/Compiled.pm cp OME/Install/MaintenanceTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/MaintenanceTask.pm cp OME/Web/SpreadsheetImporterPrompt.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/SpreadsheetImporterPrompt.pm cp OME/Web/AccessManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/AccessManager.pm cp OME/Web/DatasetOnGoogleMaps.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DatasetOnGoogleMaps.pm cp OME/Analysis/Modules/Tracking/TrackSpots.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tracking/TrackSpots.pm cp OME/Web/DBObjDetail/__OME_ModuleExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_ModuleExecution.pm cp OME/Analysis/Modules/Histogram/PlaneHistogram.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Histogram/PlaneHistogram.pm cp OME/Tasks/ChainManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ChainManager.pm cp OME/Tasks/AnnotationManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/AnnotationManager.pm cp OME/Analysis/Modules/PPM/FourierTransform.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/FourierTransform.pm cp OME/Image/DatasetMap.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/DatasetMap.pm cp OME/Web/DBObjRender/__OME_SemanticType.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_SemanticType.pm cp OME/Analysis/Handlers/NoopHandler.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/NoopHandler.pm cp OME/Fork.pm /home/michael/OME/src/perl2/blib/lib/OME/Fork.pm cp OME/Module/Category.pm /home/michael/OME/src/perl2/blib/lib/OME/Module/Category.pm cp OME/ImportExport/DataHistoryExport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/DataHistoryExport.pm cp OME/Tasks/PixelsManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/PixelsManager.pm cp OME/Tasks/CategoryManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/CategoryManager.pm cp OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm cp OME/Analysis/Modules/Tests/FauxSignature.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FauxSignature.pm cp OME/ImportEngine/GELreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/GELreader.pm cp OME/Web.pm /home/michael/OME/src/perl2/blib/lib/OME/Web.pm cp OME/ImportEngine/MetamorphHTDFormat.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/MetamorphHTDFormat.pm cp OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm cp OME/Analysis/Engine/FeatureHierarchy.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/FeatureHierarchy.pm cp OME/Web/DBObjRender.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender.pm cp OME/DBConnection.pm /home/michael/OME/src/perl2/blib/lib/OME/DBConnection.pm cp OME/Install/LibraryTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/LibraryTask.pm cp OME/Configuration/Variable.pm /home/michael/OME/src/perl2/blib/lib/OME/Configuration/Variable.pm cp omeapi.pod /home/michael/OME/src/perl2/blib/lib/omeapi.pod cp OME/Web/Login.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Login.pm cp OME/Tasks/HistoryManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/HistoryManager.pm cp OME/Util/Admin/GroupAdmin.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/GroupAdmin.pm cp OME/Remote/DTO/ProjectAssembler.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/DTO/ProjectAssembler.pm cp OME/AnalysisChainExecutionUserInputs.pm /home/michael/OME/src/perl2/blib/lib/OME/AnalysisChainExecutionUserInputs.pm cp OME/Image/Pix/t/test.t /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/test.t cp OME/Tasks/LSIDManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/LSIDManager.pm cp OME/Tasks/AttributeManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/AttributeManager.pm cp OME/Analysis/Modules/Tests/DatasetSignature.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/DatasetSignature.pm cp OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm cp OME/Image/Pix/Changes /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Changes cp OME/SemanticType/BootstrapRepository.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapRepository.pm cp OME/Analysis/Modules/ImageClassifier/ComputeFeatures.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ImageClassifier/ComputeFeatures.pm cp OME/Web/DBObjRender/__Pixels.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Pixels.pm cp OME/Web/Util/Dataset.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Util/Dataset.pm cp OME/Web/CG_Display.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/CG_Display.pm cp OME/ImportEngine/OMETIFFreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/OMETIFFreader.pm cp OME/ModuleExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution.pm cp OME/Analysis/Modules/Histogram/StackHistogram.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Histogram/StackHistogram.pm cp OME/Web/SaveViewerSettings.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/SaveViewerSettings.pm cp OME/SemanticType/Element/Label.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Element/Label.pm cp OME/Matlab/Matlab.pm /home/michael/OME/src/perl2/blib/lib/OME/Matlab/Matlab.pm cp OME/Install/t/Environment_copyTree_Test1.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test1.pm cp OME/Remote/Prototypes.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Prototypes.pm cp OME/Tasks/ModuleTasks.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ModuleTasks.pm cp OME/Remote/Apache1_99/Transport.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache1_99/Transport.pm cp OME/Analysis/Modules/Tests/FindBounds.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FindBounds.pm cp OME/Install/t/Environment_scanDir_Test.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_scanDir_Test.pm cp OME/Tasks/OMEXMLImportExport.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/OMEXMLImportExport.pm cp OME/Remote/Facades/XMLUtils.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/XMLUtils.pm cp OME/Util/Annotate/SpreadsheetWriter.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate/SpreadsheetWriter.pm cp OME/Install/LDAPConfigTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/LDAPConfigTask.pm cp OME/ImportExport/ChainExport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ChainExport.pm cp OME/Remote/Apache/XMLRPC.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache/XMLRPC.pm cp OME/Tests/SOAP-2.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/SOAP-2.pl cp OME/Task.pm /home/michael/OME/src/perl2/blib/lib/OME/Task.pm cp OME/ImportEngine/STKreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/STKreader.pm cp OME/AnalysisChainExecution/NodeExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/AnalysisChainExecution/NodeExecution.pm cp OME/ImportExport/Repacker/Repacker.xs /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Repacker.xs cp OME/Web/DBObjDetail/__OME_Image.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Image.pm cp showENV.pl /home/michael/OME/src/perl2/blib/lib/showENV.pl cp OME/Remote/Apache1_99.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache1_99.pm cp OME/Web/VisBio.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/VisBio.pm cp OME/Web/CG_ConstructTemplate.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/CG_ConstructTemplate.pm cp OME/Web/Search.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Search.pm cp OME/Web/DefaultFooterBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DefaultFooterBuilder.pm cp OME/Web/TableBrowse/HeaderBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/TableBrowse/HeaderBuilder.pm cp OME/ImportExport/Repacker/README /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/README cp OME/Web/DBObjRender/__OME_Image.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Image.pm cp OME/Tasks/ImportManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ImportManager.pm cp OME/Analysis/Modules/Statistics/StackStatistics.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Statistics/StackStatistics.pm cp OME/Web/DBObjRender/__SamplePreparation.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__SamplePreparation.pm cp OME/Web/Ping.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Ping.pm cp OME/Tasks/ProjectManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ProjectManager.pm cp OME/Web/Graph/ChainExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Graph/ChainExecution.pm cp OME/Remote/Facades/ConfigFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ConfigFacade.pm cp OME/ImportEngine/BioradReader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BioradReader.pm cp OME/Web/UploadImage.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/UploadImage.pm cp OME/ImportExport/SemanticTypeImport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/SemanticTypeImport.pm cp OME/Tasks/ImageManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ImageManager.pm cp OME/Web/DBObjDetail/__CategoryGroup.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__CategoryGroup.pm cp OME/Analysis/Modules/ROI/ImageROI.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/ImageROI.pm cp OME/Tasks/MultipleSTAnnotationManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/MultipleSTAnnotationManager.pm cp OME/Web/Search/Experimenter.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Search/Experimenter.pm cp OME/ImportExport/ChainImport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/ChainImport.pm cp OME/Web/DBObjCreate.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate.pm cp OME/Web/DefaultMenuBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DefaultMenuBuilder.pm cp OME/Web/TrainClassifier.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/TrainClassifier.pm cp OME/ModuleExecution/SemanticTypeOutput.pm /home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/SemanticTypeOutput.pm cp OME/Analysis/Handlers/CLIHandler.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handlers/CLIHandler.pm cp OME/Image/Pix/typemap /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/typemap cp OME/LookupTable.pm /home/michael/OME/src/perl2/blib/lib/OME/LookupTable.pm cp OME/Analysis/Engine/DistributedAnalysisEngineClient.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/DistributedAnalysisEngineClient.pm cp OME/Util/Annotate.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate.pm cp OME/SemanticType/BootstrapGroup.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapGroup.pm cp OME/Configuration.pm /home/michael/OME/src/perl2/blib/lib/OME/Configuration.pm cp OME/Factory.pm /home/michael/OME/src/perl2/blib/lib/OME/Factory.pm cp OME/Analysis/Modules/PPM/Gradient.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Gradient.pm cp OME/SemanticType/BootstrapExperimenterGroup.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapExperimenterGroup.pm cp OME/ImportExport/SemanticTypeExport.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/SemanticTypeExport.pm cp OME/ImportEngine/AbstractFormat.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/AbstractFormat.pm cp OME/Matlab/Makefile.PL /home/michael/OME/src/perl2/blib/lib/OME/Matlab/Makefile.PL cp OME/AnalysisChain/Node.pm /home/michael/OME/src/perl2/blib/lib/OME/AnalysisChain/Node.pm cp OME/ImportEngine/DICOM.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DICOM.pm cp OME/Web/DBObjRender/__ExternalLink.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__ExternalLink.pm cp OME/Web/DBObjRender/__Instrument.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Instrument.pm cp OME/Analysis/Modules/ROI/Image2DTiledROIs.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/Image2DTiledROIs.pm cp OME/SemanticType.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType.pm cp OME/Web/DBObjRender/__OME_Task.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Task.pm cp OME/Remote/Apache2/Transport.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2/Transport.pm cp OME/Remote.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote.pm cp OME/Tasks/NotificationManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/NotificationManager.pm cp OME/ImportExport/Repacker/Makefile.PL /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Makefile.PL cp OME/Matlab/test.pl /home/michael/OME/src/perl2/blib/lib/OME/Matlab/test.pl cp OME/Remote/Apache/HTTPProxy.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache/HTTPProxy.pm cp OME/Remote/Facades/DatasetFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/DatasetFacade.pm cp OME/Java/SemanticTypeInterface.pm /home/michael/OME/src/perl2/blib/lib/OME/Java/SemanticTypeInterface.pm cp OME/Install/ApacheConfigTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/ApacheConfigTask.pm cp OME/Web/DBObjRender/__OME_DataTable_Column.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_DataTable_Column.pm cp OME/Tasks/DatasetManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/DatasetManager.pm cp OME/Install/t/Environment_copyTree_Test2.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test2.pm cp OME/Web/Home.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Home.pm cp OME/Matlab/MANIFEST /home/michael/OME/src/perl2/blib/lib/OME/Matlab/MANIFEST cp OME/ImportEngine/XMLreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/XMLreader.pm cp OME/Util/Dev/Lint.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/Lint.pm cp OME/Database/Delegate.pm /home/michael/OME/src/perl2/blib/lib/OME/Database/Delegate.pm cp OME/Web/Search/OME_ModuleExecution.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Search/OME_ModuleExecution.pm cp OME/DataTable/Column.pm /home/michael/OME/src/perl2/blib/lib/OME/DataTable/Column.pm cp OME/ImportExport/Repacker/Repacker.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Repacker.pm cp OME/ModuleExecution/VirtualMEXMap.pm /home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/VirtualMEXMap.pm cp OME/Util/Admin/Uninstall.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/Uninstall.pm cp OME/Analysis/Modules/Tests/ImageSignature.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/ImageSignature.pm cp OME/Install/MatlabTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/MatlabTask.pm cp OME/ImportExport/Repacker/Changes /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Changes cp OME/Analysis/Modules/Statistics/PlaneStatistics.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Statistics/PlaneStatistics.pm cp OME/ImportExport/Repacker/test.pl /home/michael/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/test.pl cp OME/Web/MultiObjCreate.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/MultiObjCreate.pm cp OME/Remote/Facades/ChainRetrievalFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ChainRetrievalFacade.pm cp OME/Image.pm /home/michael/OME/src/perl2/blib/lib/OME/Image.pm cp OME/Tasks/OMEExport.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/OMEExport.pm cp OME/Web/ImportFiles.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/ImportFiles.pm cp OME/Install/Environment.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/Environment.pm cp OME/ImportEngine/DICOMconstants.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DICOMconstants.pm cp OME/Remote/Facades/ImportFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ImportFacade.pm cp OME/Remote/Facades/SessionFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/SessionFacade.pm cp OME/Install/t/Environment_copyTree_Test3.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test3.pm cp OME/Module.pm /home/michael/OME/src/perl2/blib/lib/OME/Module.pm cp OME/AnalysisChain.pm /home/michael/OME/src/perl2/blib/lib/OME/AnalysisChain.pm cp OME/Remote/DTO.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/DTO.pm cp OME/Web/GuestHeaderBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/GuestHeaderBuilder.pm cp OME/Web/Search/OME_Project.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/Search/OME_Project.pm cp OME/ImportEngine/BioFormats.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/BioFormats.pm cp OME/Project.pm /home/michael/OME/src/perl2/blib/lib/OME/Project.pm cp OME/Util/Annotate/SpreadsheetReader.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate/SpreadsheetReader.pm cp OME/Install/CoreDatabaseTablesTask.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/CoreDatabaseTablesTask.pm cp OME/Image/Pix/libpix.h /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/libpix.h cp OME/Image/Pix/MANIFEST /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/MANIFEST cp OME/Remote/Apache2/HTTPProxy.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2/HTTPProxy.pm cp OME/ImportEngine/TIFFreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/TIFFreader.pm cp OME/Matlab/CompilationREADME /home/michael/OME/src/perl2/blib/lib/OME/Matlab/CompilationREADME cp OME/SemanticType/Label.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/Label.pm cp OME/Web/DBObjRender/__DevelopmentalStage.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__DevelopmentalStage.pm cp OME/Matlab/compileDynamicLibraries.pl /home/michael/OME/src/perl2/blib/lib/OME/Matlab/compileDynamicLibraries.pl cp OME/Web/DBObjCreate/Category.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/Category.pm cp OME/Analysis/Engine/Job.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/Job.pm cp OME/Analysis/Engine/DistributedAnalysisEngineCGI.pl /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/DistributedAnalysisEngineCGI.pl cp OME/Tests/XMLRPC.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/XMLRPC.pl cp OME/Remote/Apache/Transport.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache/Transport.pm cp OME/Install/Terminal.pm /home/michael/OME/src/perl2/blib/lib/OME/Install/Terminal.pm cp serve.pl /home/michael/OME/src/perl2/blib/lib/serve.pl cp OME/Tasks/SemanticTypeManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/SemanticTypeManager.pm cp OME/Analysis/Engine.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine.pm cp OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm cp OME/Remote/Facades/AnalysisFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/AnalysisFacade.pm cp OME/Tests/LDAPtest.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/LDAPtest.pl cp OME/DataTable.pm /home/michael/OME/src/perl2/blib/lib/OME/DataTable.pm cp OME/Project/DatasetMap.pm /home/michael/OME/src/perl2/blib/lib/OME/Project/DatasetMap.pm cp OME/Util/Annotate/AnnotationWizards.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Annotate/AnnotationWizards.pm cp OME/Util/Data/Delete.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Data/Delete.pm cp OME/Web/DBObjRender/__Experimenter.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Experimenter.pm cp OME/SessionManager.pm /home/michael/OME/src/perl2/blib/lib/OME/SessionManager.pm cp OME/Analysis/Modules/ROI/Image2DROIs.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/Image2DROIs.pm cp OME/Analysis/Modules/Classification/WND_CHARM_Prediction.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/WND_CHARM_Prediction.pm cp OME/Util/OMECommander.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/OMECommander.pm cp OME/Remote/Apache2.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache2.pm cp OME/Tasks/OMEImport.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/OMEImport.pm cp OME/Remote/Facades/HistoryFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/HistoryFacade.pm cp OME/ImportEngine/DICOMreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DICOMreader.pm cp OME/Web/DBObjDetail.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail.pm cp OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl cp OME/Web/DBObjRender/__OME_DataTable.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_DataTable.pm cp OME/Tests/SOAP.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/SOAP.pl cp OME/Remote/Apache.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache.pm cp OME/Image/Server.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Server.pm cp OME/Analysis/Modules/Tests/FindRatio.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FindRatio.pm cp OME/Web/GuestFooterBuilder.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/GuestFooterBuilder.pm cp OME/Web/DBObjTable.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjTable.pm cp OME/Image/Pix/Pix.xs /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Pix.xs cp OME/Analysis/Analysis_System_Notes.txt /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Analysis_System_Notes.txt cp OME/Matlab/writeLibraryPackage.pl /home/michael/OME/src/perl2/blib/lib/OME/Matlab/writeLibraryPackage.pl cp OME/Web/MultiObjCreate/ExperimentProtocol.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/MultiObjCreate/ExperimentProtocol.pm cp OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm cp OME/Matlab/Changes /home/michael/OME/src/perl2/blib/lib/OME/Matlab/Changes cp OME/Util/Dev/wnd.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/wnd.pm cp OME/Util/Admin/UserAdmin.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/UserAdmin.pm cp OME/Java/omejava /home/michael/OME/src/perl2/blib/lib/OME/Java/omejava cp OME/Web/DBObjRender/__Husbandry.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Husbandry.pm cp OME/Image/Server/Pixels.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Server/Pixels.pm cp OME/Tests/InteractiveSOAP.pl /home/michael/OME/src/perl2/blib/lib/OME/Tests/InteractiveSOAP.pl cp OME/ModuleExecution/ActualInput.pm /home/michael/OME/src/perl2/blib/lib/OME/ModuleExecution/ActualInput.pm cp OME/Web/DBObjRender/__Category.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Category.pm cp OME/LocalFile.pm /home/michael/OME/src/perl2/blib/lib/OME/LocalFile.pm cp OME/Remote/RPC2.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/RPC2.pm cp OME/Tasks/ModuleExecutionManager.pm /home/michael/OME/src/perl2/blib/lib/OME/Tasks/ModuleExecutionManager.pm cp OME/Matlab/typemap /home/michael/OME/src/perl2/blib/lib/OME/Matlab/typemap cp OME/SemanticType/BootstrapExperimenter.pm /home/michael/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapExperimenter.pm cp OME/Web/DBObjRender/__OME_Dataset.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Dataset.pm cp OME/ImportEngine/TIFFUtils.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/TIFFUtils.pm cp OME/Web/FileTable.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/FileTable.pm cp OME/Image/Pix/t/tinyTest.d3d.dv /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest.d3d.dv cp OME/Util/Admin/OMEAdmin.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Admin/OMEAdmin.pm cp LogService.pl /home/michael/OME/src/perl2/blib/lib/LogService.pl cp OME/Remote/Facades/GenericFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/GenericFacade.pm cp OME.pm /home/michael/OME/src/perl2/blib/lib/OME.pm cp OME/Analysis/Handler.pm /home/michael/OME/src/perl2/blib/lib/OME/Analysis/Handler.pm cp OME/Module/FormalInput.pm /home/michael/OME/src/perl2/blib/lib/OME/Module/FormalInput.pm cp OME/Remote/Facades/ModuleExecutionFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ModuleExecutionFacade.pm cp OME/Web/DBObjDetail/__OME_Project.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Project.pm cp omemodules.pod /home/michael/OME/src/perl2/blib/lib/omemodules.pod cp OME-startup.pl /home/michael/OME/src/perl2/blib/lib/OME-startup.pl cp OME/Remote/Facade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facade.pm cp OME/Session.pm /home/michael/OME/src/perl2/blib/lib/OME/Session.pm cp OME/Remote/Apache1_99/HTTPProxy.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Apache1_99/HTTPProxy.pm cp OME/Database/PostgresDelegate.pm /home/michael/OME/src/perl2/blib/lib/OME/Database/PostgresDelegate.pm cp OME/Remote/DeserializerXMLRPC.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/DeserializerXMLRPC.pm cp OME/Image/Pix/Pix.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Pix.pm cp OME/Util/Dev/ChainStats.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Dev/ChainStats.pm cp newdevelopers.pod /home/michael/OME/src/perl2/blib/lib/newdevelopers.pod cp OME/DBObject.pm /home/michael/OME/src/perl2/blib/lib/OME/DBObject.pm cp OME/Remote/Facades/ModuleRetrievalFacade.pm /home/michael/OME/src/perl2/blib/lib/OME/Remote/Facades/ModuleRetrievalFacade.pm cp OME/Util/Data/Export.pm /home/michael/OME/src/perl2/blib/lib/OME/Util/Data/Export.pm cp OME/Web/DBObjCreate/OME_Project.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/OME_Project.pm cp OME/Image/Server/File.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Server/File.pm cp OME/ImportEngine/DVreader.pm /home/michael/OME/src/perl2/blib/lib/OME/ImportEngine/DVreader.pm cp OME/Web/DBObjDetail/__Category.pm /home/michael/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__Category.pm cp OME/Image/Pix/Makefile.PL /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix/Makefile.PL make[1]: Entering directory `/home/michael/OME/src/perl2/OME/Image/Pix' cp Pix.pm /home/michael/OME/src/perl2/blib/lib/OME/Image/Pix.pm /usr/bin/perl /usr/share/perl/5.8.8/ExtUtils/xsubpp -typemap /usr/share/perl/5.8/ExtUtils/typemap -typemap typemap Pix.xs > Pix.xsc && mv Pix.xsc Pix.c cc -c -I/sw/include -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl/5.8/CORE" Pix.c cc -c -I/sw/include -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl/5.8/CORE" libpix.c Running Mkbootstrap for OME::Image::Pix () chmod 644 Pix.bs rm -f /home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so cc -shared -L/usr/local/lib Pix.o libpix.o -o /home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so \ -L/usr/local/lib -ltiff \ chmod 755 /home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so cp Pix.bs /home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.bs chmod 644 /home/michael/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.bs Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Pix.3pm make[1]: Leaving directory `/home/michael/OME/src/perl2/OME/Image/Pix' make[1]: Entering directory `/home/michael/OME/src/perl2/OME/ImportExport/Repacker' cp Repacker.pm /home/michael/OME/src/perl2/blib/lib/Repacker.pm /usr/bin/perl /usr/share/perl/5.8.8/ExtUtils/xsubpp -typemap /usr/share/perl/5.8/ExtUtils/typemap Repacker.xs > Repacker.xsc && mv Repacker.xsc Repacker.c cc -c -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl/5.8/CORE" Repacker.c Running Mkbootstrap for Repacker () chmod 644 Repacker.bs rm -f /home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so cc -shared -L/usr/local/lib Repacker.o -o /home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so \ \ chmod 755 /home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so cp Repacker.bs /home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.bs chmod 644 /home/michael/OME/src/perl2/blib/arch/auto/Repacker/Repacker.bs Manifying /home/michael/OME/src/perl2/blib/man3/Repacker.3pm make[1]: Leaving directory `/home/michael/OME/src/perl2/OME/ImportExport/Repacker' cp OME/Java/omejava /home/michael/OME/src/perl2/blib/script/omejava /usr/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" /home/michael/OME/src/perl2/blib/script/omejava Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache::XMLRPC.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChain_Link.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Task.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::STKreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::ImageDetailAnnotator.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChainExecution::NodeExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Image.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::LSID.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::BMPUtils.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::ResolveFiles.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::LocalPixels.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache1_99.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Search.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::WND_CHARM_Trainer.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Superclass.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Import.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::File.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::AnnotationFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::ParentalOutput.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_Image.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChainExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ImportManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__SamplePreparation.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Statistics::StackStatistics.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::Worker.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Module.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ProjectManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::BioradReader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ConfigFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OriginalFile.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ProjectFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::SemanticTypeImport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::TemplateManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ImageManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__CategoryGroup.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::ROI::ImageROI.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::MultipleSTAnnotationManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Dataset.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Search::Experimenter.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::SerializerXMLRPC.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::SemanticTypeOutput.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::DistributedAnalysisEngineClient.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Pixels.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate::OME_Dataset.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapGroup.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Configuration.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ImageTasks.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache2::XMLRPC.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChain::Link.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Factory.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::Gradient.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapExperimenterGroup.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::AbstractFormat.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChain::Node.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::ImageAnnotationTable.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__ExternalLink.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handlers::MatlabHandler.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Instrument.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Element.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Util::Category.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::ROI::Image2DTiledROIs.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::DTO::GenericAssembler.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::Params.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_Task.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Dev.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::NotificationManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::AEFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::DatasetFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Java::SemanticTypeInterface.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_ModuleExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__BayesNetClassifier.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_DataTable_Column.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::DatasetManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Probe.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Home.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Data::dbAdmin.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::LSMreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Authenticated.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Database::Delegate.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Search::OME_ModuleExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::DataTable::Column.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::Repacker::Repacker.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_SemanticType_Element.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Java::DTOInterface.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::VirtualMEXMap.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::Uninstall.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Statistics::PlaneStatistics.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::cURL.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ChainRetrievalFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::MultiObjCreate.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::GeneStageAnnotator.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::OMEExport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ImportFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::ImportEngine.3pm MOME/ImportExport/HierarchyExport.pm:139: Unknown escape E OME/Web/ImageAnnotationBrowser.pm:387: Unknown command paragraph "=head getDimLayoutCode" OME/Web/ImageAnnotationBrowser.pm:704: Unknown command paragraph "=head copyArray generate a copy of a 1-d array =cut" OME/SessionManager.pm:244: Unknown command paragraph "=sub promptAndLogin" anifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::SessionFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handlers::DefaultLoopHandler.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Module.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChain.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::DTO.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::ImageAnnotationDetail.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Fluorofor.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::UserState.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::HierarchyExport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Search::OME_Project.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::HierarchyImport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ClassifierTasks.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::Configure.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Project.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate::SpreadsheetReader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Dataset.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::SignatureStitcher.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::ImageAnnotationBrowser.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::BMPreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::TIFFreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Label.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Objective.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::ModuleImport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__DevelopmentalStage.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate::Category.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::Job.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::DistributedAnalysisEngineCGI.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Commands.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::ML_BayesNet_Trainer.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::SemanticTypeManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::AnalysisFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChainExecution_NodeExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Feature.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::GetGraphics.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::Typecast.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::DataTable.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate::AnnotationWizards.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Experimenter.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DatasetOnGoogleMaps.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::AccessManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::WND_CHARM_Prediction.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::ROI::Image2DROIs.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SessionManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::OMEImport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache2.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::OMECommander.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::DICOMreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::HisOME/Web/DBObjRender.pm:615: Unknown command paragraph "=Head2 renderData" OME/Web/DBObjRender.pm:1130: Unknown command paragraph "=Head2 _getLSIDmanager" toryFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_ModuleExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Histogram::PlaneHistogram.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::NonblockingSlaveWorkerCGI.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ChainManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_DataTable.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::AnnotationManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::FourierTransform.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Server.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Apache.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_SemanticType.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handlers::NoopHandler.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Fork.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjTable.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportExport::DataHistoryExport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::PixelsManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::CategoryManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::PPM::Typecast2DerivedPixels.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Classification::ML_BayesNet_Classifier.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::MultiObjCreate::ExperimentProtocol.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::GELreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::UserAdmin.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Server::Pixels.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Husbandry.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChainExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Engine::FeatureHierarchy.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution::ActualInput.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Category.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::LocalFile.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ModuleExecutionManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::RPC2.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Configuration::Variable.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapExperimenter.3pm Manifying /home/michael/OME/src/perl2/blib/man3/omeapi.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_Dataset.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::TIFFUtils.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::HistoryManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::GroupAdmin.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::DTO::ProjectAssembler.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Admin::OMEAdmin.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::AnalysisChainExecutionUserInputs.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::LSIDManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::AttributeManager.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__OME_AnalysisChain_Node.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::GenericFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::BootstrapRepository.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjRender::__Pixels.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Handler.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::Util::Dataset.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ModuleExecution.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ModuleExecutionFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Analysis::Modules::Histogram::StackHistogram.3pm Manifying /home/michael/OME/src/perl2/blib/man3/omemodules.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__OME_Project.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::SemanticType::Element::Label.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Matlab::Matlab.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Session.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Database::PostgresDelegate.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::DeserializerXMLRPC.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Prototypes.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Pix::Pix.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::ModuleTasks.3pm Manifying /home/michael/OME/src/perl2/blib/man3/newdevelopers.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::ModuleRetrievalFacade.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::DBObject.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjCreate::OME_Project.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::ImportEngine::DVreader.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Image::Server::File.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Tasks::OMEXMLImportExport.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Remote::Facades::XMLUtils.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Util::Annotate::SpreadsheetWriter.3pm Manifying /home/michael/OME/src/perl2/blib/man3/OME::Web::DBObjDetail::__Category.3pm " INSTALLING MODULE -- 'make install' SUCCESS -- OUTPUT: "make[1]: Entering directory `/home/michael/OME/src/perl2/OME/Image/Pix' make[1]: Leaving directory `/home/michael/OME/src/perl2/OME/Image/Pix' make[1]: Entering directory `/home/michael/OME/src/perl2/OME/ImportExport/Repacker' make[1]: Leaving directory `/home/michael/OME/src/perl2/OME/ImportExport/Repacker' Writing /usr/local/lib/perl/5.8.8/auto/OME/.packlist Appending installation info to /usr/local/lib/perl/5.8.8/perllocal.pod "