./blib/lib/Repacker.pm syntax OK ./blib/lib/OME/AnalysisChain/Link.pm syntax OK ./blib/lib/OME/AnalysisChain/Node.pm syntax OK ./blib/lib/OME/Module.pm syntax OK ./blib/lib/OME/Dataset.pm syntax OK ./blib/lib/OME/Tasks/ImageManager.pm syntax OK ./blib/lib/OME/Tasks/ImportManager.pm syntax OK ./blib/lib/OME/Tasks/ModuleExecutionManager.pm syntax OK ./blib/lib/OME/Tasks/PixelsManager.pm syntax OK ./blib/lib/OME/Tasks/ProjectManager.pm syntax OK ./blib/lib/OME/Tasks/DatasetManager.pm syntax OK ./blib/lib/OME/Tasks/LSIDManager.pm syntax OK ./blib/lib/OME/Tasks/OMEExport.pm syntax OK ./blib/lib/OME/Tasks/MultipleSTAnnotationManager.pm syntax OK ./blib/lib/OME/Tasks/OMEXMLImportExport.pm syntax OK ./blib/lib/OME/Tasks/ChainManager.pm syntax OK ./blib/lib/OME/Tasks/ModuleTasks.pm syntax OK ./blib/lib/OME/Tasks/NotificationManager.pm syntax OK ./blib/lib/OME/Tasks/SemanticTypeManager.pm syntax OK ./blib/lib/OME/Tasks/ClassifierTasks.pm syntax OK ./blib/lib/OME/Tasks/AttributeManager.pm syntax OK ./blib/lib/OME/Tasks/AnnotationManager.pm syntax OK ./blib/lib/OME/Tasks/AEFacade.pm syntax OK ./blib/lib/OME/Tasks/OMEImport.pm syntax OK ./blib/lib/OME/Tasks/CategoryManager.pm syntax OK ./blib/lib/OME/Tasks/HistoryManager.pm syntax OK ./blib/lib/OME/Tasks/ImageTasks.pm syntax OK ./blib/lib/OME/SetDB.pm syntax OK ./blib/lib/OME/ModuleExecution/ActualInput.pm syntax OK ./blib/lib/OME/ModuleExecution/ParentalOutput.pm syntax OK ./blib/lib/OME/ModuleExecution/SemanticTypeOutput.pm syntax OK ./blib/lib/OME/ModuleExecution/VirtualMEXMap.pm syntax OK ./blib/lib/OME/DataTable.pm syntax OK Use of uninitialized value in concatenation (.) or string at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/ApacheConfigTask.pm line 75. ./blib/lib/OME/Install/CoreDatabaseTablesTask.pm syntax OK ./blib/lib/OME/Install/ApacheConfigTask.pm syntax OK ./blib/lib/OME/Install/AnalysisConfigTask.pm syntax OK ./blib/lib/OME/Install/Terminal.pm syntax OK ./blib/lib/OME/Install/MatlabTask.pm syntax OK ./blib/lib/OME/Install/PerlModuleTask.pm syntax OK Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Install/t/Environment_copyTree_Test1.pm line 45 BEGIN failed--compilation aborted at ./blib/lib/OME/Install/t/Environment_copyTree_Test1.pm line 45. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Install/t/Environment_copyTree_Test2.pm line 45 BEGIN failed--compilation aborted at ./blib/lib/OME/Install/t/Environment_copyTree_Test2.pm line 45. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Install/t/Environment_copyTree_Test3.pm line 45 BEGIN failed--compilation aborted at ./blib/lib/OME/Install/t/Environment_copyTree_Test3.pm line 45. Base class package "Test::Unit::TestSuite" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Install/t/RegressionSuite.pm line 43 BEGIN failed--compilation aborted at ./blib/lib/OME/Install/t/RegressionSuite.pm line 43. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Install/t/Environment_scanDir_Test.pm line 45 BEGIN failed--compilation aborted at ./blib/lib/OME/Install/t/Environment_scanDir_Test.pm line 45. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Install/t/Environment_deleteTree_Test.pm line 45 BEGIN failed--compilation aborted at ./blib/lib/OME/Install/t/Environment_deleteTree_Test.pm line 45. ./blib/lib/OME/Install/InstallationTask.pm syntax OK ./blib/lib/OME/Install/Environment.pm syntax OK ./blib/lib/OME/Install/CoreSystemTask.pm syntax OK ./blib/lib/OME/Install/LibraryTask.pm syntax OK ./blib/lib/OME/Install/Util.pm syntax OK ./blib/lib/OME/Install/MaintenanceTask.pm syntax OK ./blib/lib/OME/Install/PreInstallTask.pm syntax OK ./blib/lib/OME/DataTable/Column.pm syntax OK ./blib/lib/OME/Image.pm syntax OK ./blib/lib/OME/File.pm syntax OK ./blib/lib/OME/Feature.pm syntax OK ./blib/lib/OME/SemanticType.pm syntax OK ./blib/lib/OME/Session.pm syntax OK ./blib/lib/OME/Image/Server.pm syntax OK ./blib/lib/OME/Image/Server/File.pm syntax OK ./blib/lib/OME/Image/Server/Pixels.pm syntax OK ./blib/lib/OME/Image/Pix.pm syntax OK ./blib/lib/OME/Image/DatasetMap.pm syntax OK ./blib/lib/OME/Image/Pix/Pix.pm syntax OK ./blib/lib/OME/Image/LocalPixels.pm syntax OK ./blib/lib/OME/Image/Pixels.pm syntax OK ./blib/lib/OME/LSID.pm syntax OK ./blib/lib/OME/Java/DTOInterface.pm syntax OK ./blib/lib/OME/Java/SemanticTypeInterface.pm syntax OK ./blib/lib/OME/ViewerPreferences.pm syntax OK ./blib/lib/OME/Configuration.pm syntax OK ./blib/lib/OME/Project/DatasetMap.pm syntax OK ./blib/lib/OME/DBObject.pm syntax OK ./blib/lib/OME/Web.pm syntax OK ./blib/lib/OME/Matlab/Matlab.pm syntax OK ./blib/lib/OME/Matlab/Compiled.pm syntax OK ./blib/lib/OME/Analysis/Engine.pm syntax OK ./blib/lib/OME/Analysis/Handlers/NoopHandler.pm syntax OK ./blib/lib/OME/Analysis/Handlers/DefaultLoopHandler.pm syntax OK ./blib/lib/OME/Analysis/Handlers/EchoHandler.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Analysis/Handlers/MatlabHandler.pm line 67. BEGIN failed--compilation aborted at ./blib/lib/OME/Analysis/Handlers/MatlabHandler.pm line 67. ./blib/lib/OME/Analysis/Handlers/CLIHandler.pm syntax OK ./blib/lib/OME/Analysis/Handler.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tests/DatasetSignature.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tests/FindBounds.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tests/FindRatio.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tests/ImageSignature.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tests/PassThrough.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tests/FauxSignature.pm syntax OK ./blib/lib/OME/Analysis/Modules/Statistics/PlaneStatistics.pm syntax OK ./blib/lib/OME/Analysis/Modules/Statistics/StackStatistics.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm line 61. BEGIN failed--compilation aborted at ./blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm line 61. ./blib/lib/OME/Analysis/Modules/Classification/SignatureStitcher.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm line 61. BEGIN failed--compilation aborted at ./blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm line 61. ./blib/lib/OME/Analysis/Modules/ROI/Image2DTiledROIs.pm syntax OK ./blib/lib/OME/Analysis/Modules/ROI/Image2DROIs.pm syntax OK ./blib/lib/OME/Analysis/Modules/ROI/ImageROI.pm syntax OK ./blib/lib/OME/Analysis/Modules/Histogram/PlaneHistogram.pm syntax OK ./blib/lib/OME/Analysis/Modules/Histogram/StackHistogram.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tracking/TrackSpots.pm syntax OK ./blib/lib/OME/Analysis/Modules/Tracking/FindSpots.pm syntax OK ./blib/lib/OME/Analysis/Modules/PPM/FourierTransform.pm syntax OK ./blib/lib/OME/Analysis/Modules/PPM/Gradient.pm syntax OK ./blib/lib/OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm syntax OK ./blib/lib/OME/Analysis/Modules/PPM/Typecast.pm syntax OK ./blib/lib/OME/Analysis/Modules/Slicers/Channels.pm syntax OK ./blib/lib/OME/Analysis/Modules/Slicers/Stacks.pm syntax OK ./blib/lib/OME/Analysis/Modules/Slicers/Timepoints.pm syntax OK ./blib/lib/OME/Analysis/Modules/Slicers/Pixels.pm syntax OK ./blib/lib/OME/Analysis/Modules/Slicers/Planes.pm syntax OK ./blib/lib/OME/Analysis/Engine/Executor.pm syntax OK ./blib/lib/OME/Analysis/Engine/ForkedPerlExecutor.pm syntax OK ./blib/lib/OME/Analysis/Engine/Worker.pm syntax OK ./blib/lib/OME/Analysis/Engine/FeatureHierarchy.pm syntax OK ./blib/lib/OME/Analysis/Engine/SimpleWorkerExecutor.pm syntax OK ./blib/lib/OME/Analysis/Engine/DataPaths.pm syntax OK ./blib/lib/OME/Analysis/Engine/UnthreadedPerlExecutor.pm syntax OK ./blib/lib/OME/Factory.pm syntax OK ./blib/lib/OME/ImportEngine/OMETIFFreader.pm syntax OK ./blib/lib/OME/ImportEngine/BioradReader.pm syntax OK ./blib/lib/OME/ImportEngine/MetamorphHTDFormat.pm syntax OK ./blib/lib/OME/ImportEngine/BMPreader.pm syntax OK ./blib/lib/OME/ImportEngine/DICOMconstants.pm syntax OK ./blib/lib/OME/ImportEngine/DICOMreader.pm syntax OK ./blib/lib/OME/ImportEngine/Params.pm syntax OK ./blib/lib/OME/ImportEngine/BMPUtils.pm syntax OK ./blib/lib/OME/ImportEngine/GELreader.pm syntax OK ./blib/lib/OME/ImportEngine/AbstractFormat.pm syntax OK ./blib/lib/OME/ImportEngine/LSMreader.pm syntax OK ./blib/lib/OME/ImportEngine/STKreader.pm syntax OK ./blib/lib/OME/ImportEngine/INCellRunXML.pm syntax OK ./blib/lib/OME/ImportEngine/TIFFreader.pm syntax OK ./blib/lib/OME/ImportEngine/TIFFUtils.pm syntax OK ./blib/lib/OME/ImportEngine/DICOM.pm syntax OK ./blib/lib/OME/ImportEngine/ImportEngine.pm syntax OK ./blib/lib/OME/ImportEngine/DVreader.pm syntax OK ./blib/lib/OME/ImportEngine/XMLreader.pm syntax OK ./blib/lib/OME/Remote/DTO.pm syntax OK ./blib/lib/OME/Remote/Prototypes.pm syntax OK Base class package "XMLRPC::Deserializer" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Remote/DeserializerXMLRPC.pm line 39 BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/DeserializerXMLRPC.pm line 39. Can't locate Apache/Constants.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Remote/Apache/XMLRPC.pm line 15. BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache/XMLRPC.pm line 15. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache/Transport.pm line 19 BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache/Transport.pm line 19. Compilation failed in require at (eval 1) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache/HTTPProxy.pm line 20. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Remote/Apache/Transport.pm line 19 BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache/Transport.pm line 19. ./blib/lib/OME/Remote/Apache.pm syntax OK ./blib/lib/OME/Remote/Facades/GenericFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/ConfigFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/ImportFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/ProjectFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/AnnotationFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/ModuleExecutionFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/XMLUtils.pm syntax OK ./blib/lib/OME/Remote/Facades/ModuleRetrievalFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/SessionFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/HistoryFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/DatasetFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/ChainRetrievalFacade.pm syntax OK ./blib/lib/OME/Remote/Facades/AnalysisFacade.pm syntax OK ./blib/lib/OME/Remote/Facade.pm syntax OK ./blib/lib/OME/Remote/Apache2.pm syntax OK ./blib/lib/OME/Remote/Apache2/XMLRPC.pm syntax OK Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache2/Transport.pm line 20 BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache2/Transport.pm line 20. Compilation failed in require at (eval 1) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache2/HTTPProxy.pm line 20. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Remote/Apache2/Transport.pm line 20 BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache2/Transport.pm line 20. Can't locate Apache2.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/Transport.pm line 22. Compilation failed in require at (eval 80) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/HTTPProxy.pm line 20. Compilation failed in require at (eval 79) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache1_99.pm line 7. Base class package "XMLRPC::Serializer" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Remote/SerializerXMLRPC.pm line 39 BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/SerializerXMLRPC.pm line 39. ./blib/lib/OME/Remote/DTO/ProjectAssembler.pm syntax OK ./blib/lib/OME/Remote/DTO/GenericAssembler.pm syntax OK ./blib/lib/OME/Remote/RPC2.pm syntax OK Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/Transport.pm line 20 BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/Transport.pm line 20. Compilation failed in require at (eval 1) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache1_99/HTTPProxy.pm line 20. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./blib/lib/OME/Remote/Apache1_99/Transport.pm line 20 BEGIN failed--compilation aborted at ./blib/lib/OME/Remote/Apache1_99/Transport.pm line 20. ./blib/lib/OME/LocalFile.pm syntax OK ./blib/lib/OME/Web/Logout.pm syntax OK ./blib/lib/OME/Web/CG_ConstructTemplate.pm syntax OK ./blib/lib/OME/Web/GuestMenuBuilder.pm syntax OK ./blib/lib/OME/Web/UploadImage.pm syntax OK ./blib/lib/OME/Web/GeneStageAnnotator.pm syntax OK ./blib/lib/OME/Web/ImportFiles.pm syntax OK ./blib/lib/OME/Web/CG_Display.pm syntax OK ./blib/lib/OME/Web/Search/OME_ModuleExecution.pm syntax OK ./blib/lib/OME/Web/Search/OME_Project.pm syntax OK ./blib/lib/OME/Web/Search/Experimenter.pm syntax OK ./blib/lib/OME/Web/DefaultMenuBuilder.pm syntax OK ./blib/lib/OME/Web/DefaultHeaderBuilder.pm syntax OK ./blib/lib/OME/Web/VisBio.pm syntax OK ./blib/lib/OME/Web/TrainClassifier.pm syntax OK ./blib/lib/OME/Web/GetGraphics.pm syntax OK ./blib/lib/OME/Web/XMLFileExport.pm syntax OK ./blib/lib/OME/Web/Wizards/ImportAndAnnotateImages.pm syntax OK ./blib/lib/OME/Web/ImportImages.pm syntax OK ./blib/lib/OME/Web/ImageAnnotationDetail.pm syntax OK ./blib/lib/OME/Web/DBObjRender.pm syntax OK ./blib/lib/OME/Web/FileTable.pm syntax OK ./blib/lib/OME/Web/CG_Search.pm syntax OK ./blib/lib/OME/Web/DatasetOnGoogleMaps.pm syntax OK ./blib/lib/OME/Web/DBObjCreate/Category.pm syntax OK ./blib/lib/OME/Web/DBObjCreate/OME_Project.pm syntax OK ./blib/lib/OME/Web/DBObjCreate/OME_Dataset.pm syntax OK ./blib/lib/OME/Web/TaskProgress.pm syntax OK ./blib/lib/OME/Web/Ping.pm syntax OK ./blib/lib/OME/Web/ImageAnnotationBrowser.pm syntax OK ./blib/lib/OME/Web/Login.pm syntax OK ./blib/lib/OME/Web/AccessManager.pm syntax OK ./blib/lib/OME/Web/TemplateManager.pm syntax OK ./blib/lib/OME/Web/Home.pm syntax OK ./blib/lib/OME/Web/SaveViewerSettings.pm syntax OK ./blib/lib/OME/Web/MultiObjCreate.pm syntax OK ./blib/lib/OME/Web/DBObjTable.pm syntax OK ./blib/lib/OME/Web/DBObjDetail.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__CategoryGroup.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__OME_ModuleExecution.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__OME_Project.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__OME_Image.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__OME_Module.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__Category.pm syntax OK ./blib/lib/OME/Web/DBObjDetail/__OME_Dataset.pm syntax OK ./blib/lib/OME/Web/Search.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__DevelopmentalStage.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_ModuleExecution.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Husbandry.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__ExternalLink.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_Image.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Probe.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OriginalFile.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_SemanticType_Element.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__BayesNetClassifier.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Category.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Pixels.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_Task.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_DataTable_Column.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Fluorofor.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Objective.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__SamplePreparation.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_DataTable.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Experimenter.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__Instrument.pm syntax OK ./blib/lib/OME/Web/DBObjRender/__OME_Dataset.pm syntax OK ./blib/lib/OME/Web/CG_Annotator.pm syntax OK ./blib/lib/OME/Web/Authenticated.pm syntax OK ./blib/lib/OME/Web/MultiObjCreate/ExperimentProtocol.pm syntax OK Can't locate SVG/TT/Graph/TimeSeries.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Web/Graph/NodeExecutions.pm line 46. BEGIN failed--compilation aborted at ./blib/lib/OME/Web/Graph/NodeExecutions.pm line 46. Can't locate SVG/TT/Graph/TimeSeries.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Web/Graph/ChainExecution.pm line 46. BEGIN failed--compilation aborted at ./blib/lib/OME/Web/Graph/ChainExecution.pm line 46. ./blib/lib/OME/Web/FindSpots.pm syntax OK ./blib/lib/OME/Web/Util/Dataset.pm syntax OK ./blib/lib/OME/Web/Util/Category.pm syntax OK ./blib/lib/OME/Web/TableBrowse/FooterBuilder.pm syntax OK ./blib/lib/OME/Web/TableBrowse/HeaderBuilder.pm syntax OK ./blib/lib/OME/Web/TableBrowse.pm syntax OK ./blib/lib/OME/Web/ImageAnnotationTable.pm syntax OK ./blib/lib/OME/Web/DBObjCreate.pm syntax OK ./blib/lib/OME/Web/ExecuteChain.pm syntax OK ./blib/lib/OME/Web/ImageDetailAnnotator.pm syntax OK ./blib/lib/OME/Web/STdoc.pm syntax OK ./blib/lib/OME/Web/RunClassifier.pm syntax OK ./blib/lib/OME/Web/SpreadsheetImporterPrompt.pm syntax OK ./blib/lib/OME/Web/ImportModules.pm syntax OK ./blib/lib/OME/Web/GuestHeaderBuilder.pm syntax OK ./blib/lib/OME/DBConnection.pm syntax OK ./blib/lib/OME/LookupTable/Entry.pm syntax OK ./blib/lib/OME/Database/Delegate.pm syntax OK ./blib/lib/OME/Database/PostgresDelegate.pm syntax OK ./blib/lib/OME/SessionManager.pm syntax OK ./blib/lib/OME/Task.pm syntax OK ./blib/lib/OME/ModuleExecution.pm syntax OK ./blib/lib/OME/Remote.pm syntax OK ./blib/lib/OME/SemanticType/BootstrapExperimenter.pm syntax OK ./blib/lib/OME/SemanticType/BootstrapExperimenterGroup.pm syntax OK ./blib/lib/OME/SemanticType/BootstrapGroup.pm syntax OK ./blib/lib/OME/SemanticType/Superclass.pm syntax OK ./blib/lib/OME/SemanticType/BootstrapRepository.pm syntax OK ./blib/lib/OME/SemanticType/Element.pm syntax OK ./blib/lib/OME/Module/FormalOutput.pm syntax OK ./blib/lib/OME/Module/Category.pm syntax OK ./blib/lib/OME/Module/FormalInput.pm syntax OK ./blib/lib/OME/AnalysisChain.pm syntax OK ./blib/lib/OME/Util/Data/dbAdmin.pm syntax OK ./blib/lib/OME/Util/Data/Export.pm syntax OK ./blib/lib/OME/Util/Data/Delete.pm syntax OK ./blib/lib/OME/Util/Import.pm syntax OK ./blib/lib/OME/Util/Annotate/Ai_compound_importer.pm syntax OK ./blib/lib/OME/Util/Annotate/SpreadsheetReader.pm syntax OK ./blib/lib/OME/Util/Annotate/SpreadsheetWriter.pm syntax OK ./blib/lib/OME/Util/Annotate/INCA_analysis_importer.pm syntax OK ./blib/lib/OME/Util/Annotate/AnnotationWizards.pm syntax OK ./blib/lib/OME/Util/cURL.pm syntax OK ./blib/lib/OME/Util/Dev/ChainStats.pm syntax OK ./blib/lib/OME/Util/Dev/Lint.pm syntax OK ./blib/lib/OME/Util/Dev/Templates.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /OME/Inline/lib /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./blib/lib/OME/Util/Dev/Classifier.pm line 56. BEGIN failed--compilation aborted at ./blib/lib/OME/Util/Dev/Classifier.pm line 56. ./blib/lib/OME/Util/OMECommander.pm syntax OK ./blib/lib/OME/Util/Dev.pm syntax OK ./blib/lib/OME/Util/Commands.pm syntax OK ./blib/lib/OME/Util/Annotate.pm syntax OK ./blib/lib/OME/Util/ExecuteChain.pm syntax OK ./blib/lib/OME/Util/Admin/GroupAdmin.pm syntax OK ./blib/lib/OME/Util/Admin/Uninstall.pm syntax OK ./blib/lib/OME/Util/Admin/UserAdmin.pm syntax OK ./blib/lib/OME/Util/Admin/OMEAdmin.pm syntax OK ./blib/lib/OME/Util/Admin/Configure.pm syntax OK ./blib/lib/OME/Util/Top.pm syntax OK ./blib/lib/OME/AnalysisPath/Map.pm syntax OK ./blib/lib/OME/Fork.pm syntax OK ./blib/lib/OME/Configuration/Variable.pm syntax OK ./blib/lib/OME/LookupTable.pm syntax OK ./blib/lib/OME/UserState.pm syntax OK ./blib/lib/OME/Project.pm syntax OK ./blib/lib/OME/ImportExport/DataHistoryImport.pm syntax OK ./blib/lib/OME/ImportExport/SemanticTypeExport.pm syntax OK ./blib/lib/OME/ImportExport/ResolveFiles.pm syntax OK ./blib/lib/OME/ImportExport/SemanticTypeImport.pm syntax OK ./blib/lib/OME/ImportExport/Repacker/Repacker.pm syntax OK ./blib/lib/OME/ImportExport/DataHistoryExport.pm syntax OK Too many arguments for OME::ImportExport::HierarchyExport::ODBC2XML_timestamp at ./blib/lib/OME/ImportExport/HierarchyExport.pm line 482, near ")) " Too many arguments for OME::ImportExport::HierarchyExport::ODBC2XML_timestamp at ./blib/lib/OME/ImportExport/HierarchyExport.pm line 605, near "))" ./blib/lib/OME/ImportExport/HierarchyExport.pm had compilation errors. ./blib/lib/OME/ImportExport/HierarchyImport.pm syntax OK ./blib/lib/OME/ImportExport/ChainImport.pm syntax OK ./blib/lib/OME/ImportExport/ModuleImport.pm syntax OK ./blib/lib/OME/ImportExport/ChainExport.pm syntax OK ./blib/lib/OME/AnalysisChainExecution.pm syntax OK ./blib/lib/OME/AnalysisPath.pm syntax OK ./blib/lib/OME/AnalysisChainExecution/NodeExecution.pm syntax OK ./blib/lib/OME.pm syntax OK ./blib/lib/PostgresDelegate.pm syntax OK ./OME/AnalysisChain/Link.pm syntax OK ./OME/AnalysisChain/Node.pm syntax OK ./OME/Module.pm syntax OK ./OME/Dataset.pm syntax OK ./OME/Tasks/ImageManager.pm syntax OK ./OME/Tasks/ImportManager.pm syntax OK ./OME/Tasks/ModuleExecutionManager.pm syntax OK ./OME/Tasks/PixelsManager.pm syntax OK ./OME/Tasks/ProjectManager.pm syntax OK ./OME/Tasks/DatasetManager.pm syntax OK ./OME/Tasks/LSIDManager.pm syntax OK ./OME/Tasks/OMEExport.pm syntax OK ./OME/Tasks/MultipleSTAnnotationManager.pm syntax OK ./OME/Tasks/OMEXMLImportExport.pm syntax OK ./OME/Tasks/ChainManager.pm syntax OK ./OME/Tasks/ModuleTasks.pm syntax OK ./OME/Tasks/NotificationManager.pm syntax OK ./OME/Tasks/SemanticTypeManager.pm syntax OK ./OME/Tasks/ClassifierTasks.pm syntax OK ./OME/Tasks/AttributeManager.pm syntax OK ./OME/Tasks/AnnotationManager.pm syntax OK ./OME/Tasks/AEFacade.pm syntax OK ./OME/Tasks/OMEImport.pm syntax OK ./OME/Tasks/CategoryManager.pm syntax OK ./OME/Tasks/HistoryManager.pm syntax OK ./OME/Tasks/ImageTasks.pm syntax OK ./OME/SetDB.pm syntax OK ./OME/ModuleExecution/ActualInput.pm syntax OK ./OME/ModuleExecution/ParentalOutput.pm syntax OK ./OME/ModuleExecution/SemanticTypeOutput.pm syntax OK ./OME/ModuleExecution/VirtualMEXMap.pm syntax OK ./OME/DataTable.pm syntax OK Use of uninitialized value in concatenation (.) or string at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/ApacheConfigTask.pm line 75. ./OME/Install/CoreDatabaseTablesTask.pm syntax OK ./OME/Install/ApacheConfigTask.pm syntax OK ./OME/Install/AnalysisConfigTask.pm syntax OK ./OME/Install/Terminal.pm syntax OK ./OME/Install/MatlabTask.pm syntax OK ./OME/Install/PerlModuleTask.pm syntax OK Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Install/t/Environment_copyTree_Test1.pm line 45 BEGIN failed--compilation aborted at ./OME/Install/t/Environment_copyTree_Test1.pm line 45. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Install/t/Environment_copyTree_Test2.pm line 45 BEGIN failed--compilation aborted at ./OME/Install/t/Environment_copyTree_Test2.pm line 45. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Install/t/Environment_copyTree_Test3.pm line 45 BEGIN failed--compilation aborted at ./OME/Install/t/Environment_copyTree_Test3.pm line 45. Base class package "Test::Unit::TestSuite" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Install/t/RegressionSuite.pm line 43 BEGIN failed--compilation aborted at ./OME/Install/t/RegressionSuite.pm line 43. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Install/t/Environment_scanDir_Test.pm line 45 BEGIN failed--compilation aborted at ./OME/Install/t/Environment_scanDir_Test.pm line 45. Base class package "Test::Unit::TestCase" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Install/t/Environment_deleteTree_Test.pm line 45 BEGIN failed--compilation aborted at ./OME/Install/t/Environment_deleteTree_Test.pm line 45. ./OME/Install/InstallationTask.pm syntax OK ./OME/Install/Environment.pm syntax OK ./OME/Install/CoreSystemTask.pm syntax OK ./OME/Install/LibraryTask.pm syntax OK ./OME/Install/Util.pm syntax OK ./OME/Install/MaintenanceTask.pm syntax OK ./OME/Install/PreInstallTask.pm syntax OK ./OME/DataTable/Column.pm syntax OK ./OME/Image.pm syntax OK ./OME/File.pm syntax OK ./OME/Feature.pm syntax OK ./OME/SemanticType.pm syntax OK ./OME/Session.pm syntax OK ./OME/Image/Server.pm syntax OK ./OME/Image/Server/File.pm syntax OK ./OME/Image/Server/Pixels.pm syntax OK ./OME/Image/DatasetMap.pm syntax OK ./OME/Image/Pix/Pix.pm syntax OK ./OME/Image/LocalPixels.pm syntax OK ./OME/Image/Pixels.pm syntax OK ./OME/LSID.pm syntax OK ./OME/Java/DTOInterface.pm syntax OK ./OME/Java/SemanticTypeInterface.pm syntax OK ./OME/ViewerPreferences.pm syntax OK ./OME/Configuration.pm syntax OK ./OME/Project/DatasetMap.pm syntax OK ./OME/DBObject.pm syntax OK ./OME/Web.pm syntax OK ./OME/Matlab/Matlab.pm syntax OK ./OME/Matlab/Compiled.pm syntax OK ./OME/Analysis/Engine.pm syntax OK ./OME/Analysis/Handlers/NoopHandler.pm syntax OK ./OME/Analysis/Handlers/DefaultLoopHandler.pm syntax OK ./OME/Analysis/Handlers/EchoHandler.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Analysis/Handlers/MatlabHandler.pm line 67. BEGIN failed--compilation aborted at ./OME/Analysis/Handlers/MatlabHandler.pm line 67. ./OME/Analysis/Handlers/CLIHandler.pm syntax OK ./OME/Analysis/Handler.pm syntax OK ./OME/Analysis/Modules/Tests/DatasetSignature.pm syntax OK ./OME/Analysis/Modules/Tests/FindBounds.pm syntax OK ./OME/Analysis/Modules/Tests/FindRatio.pm syntax OK ./OME/Analysis/Modules/Tests/ImageSignature.pm syntax OK ./OME/Analysis/Modules/Tests/PassThrough.pm syntax OK ./OME/Analysis/Modules/Tests/FauxSignature.pm syntax OK ./OME/Analysis/Modules/Statistics/PlaneStatistics.pm syntax OK ./OME/Analysis/Modules/Statistics/StackStatistics.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm line 61. BEGIN failed--compilation aborted at ./OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm line 61. ./OME/Analysis/Modules/Classification/SignatureStitcher.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm line 61. BEGIN failed--compilation aborted at ./OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm line 61. ./OME/Analysis/Modules/ROI/Image2DTiledROIs.pm syntax OK ./OME/Analysis/Modules/ROI/Image2DROIs.pm syntax OK ./OME/Analysis/Modules/ROI/ImageROI.pm syntax OK ./OME/Analysis/Modules/Histogram/PlaneHistogram.pm syntax OK ./OME/Analysis/Modules/Histogram/StackHistogram.pm syntax OK ./OME/Analysis/Modules/Tracking/TrackSpots.pm syntax OK ./OME/Analysis/Modules/Tracking/FindSpots.pm syntax OK ./OME/Analysis/Modules/PPM/FourierTransform.pm syntax OK ./OME/Analysis/Modules/PPM/Gradient.pm syntax OK ./OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm syntax OK ./OME/Analysis/Modules/PPM/Typecast.pm syntax OK ./OME/Analysis/Modules/Slicers/Channels.pm syntax OK ./OME/Analysis/Modules/Slicers/Stacks.pm syntax OK ./OME/Analysis/Modules/Slicers/Timepoints.pm syntax OK ./OME/Analysis/Modules/Slicers/Pixels.pm syntax OK ./OME/Analysis/Modules/Slicers/Planes.pm syntax OK ./OME/Analysis/Engine/Executor.pm syntax OK ./OME/Analysis/Engine/ForkedPerlExecutor.pm syntax OK ./OME/Analysis/Engine/Worker.pm syntax OK ./OME/Analysis/Engine/FeatureHierarchy.pm syntax OK ./OME/Analysis/Engine/SimpleWorkerExecutor.pm syntax OK ./OME/Analysis/Engine/DataPaths.pm syntax OK ./OME/Analysis/Engine/UnthreadedPerlExecutor.pm syntax OK ./OME/Factory.pm syntax OK ./OME/ImportEngine/OMETIFFreader.pm syntax OK ./OME/ImportEngine/BioradReader.pm syntax OK ./OME/ImportEngine/MetamorphHTDFormat.pm syntax OK ./OME/ImportEngine/BMPreader.pm syntax OK ./OME/ImportEngine/DICOMconstants.pm syntax OK ./OME/ImportEngine/DICOMreader.pm syntax OK ./OME/ImportEngine/Params.pm syntax OK ./OME/ImportEngine/BMPUtils.pm syntax OK ./OME/ImportEngine/GELreader.pm syntax OK ./OME/ImportEngine/AbstractFormat.pm syntax OK ./OME/ImportEngine/LSMreader.pm syntax OK ./OME/ImportEngine/STKreader.pm syntax OK ./OME/ImportEngine/INCellRunXML.pm syntax OK ./OME/ImportEngine/TIFFreader.pm syntax OK ./OME/ImportEngine/TIFFUtils.pm syntax OK ./OME/ImportEngine/DICOM.pm syntax OK ./OME/ImportEngine/ImportEngine.pm syntax OK ./OME/ImportEngine/DVreader.pm syntax OK ./OME/ImportEngine/XMLreader.pm syntax OK ./OME/Remote/DTO.pm syntax OK ./OME/Remote/Prototypes.pm syntax OK Base class package "XMLRPC::Deserializer" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Remote/DeserializerXMLRPC.pm line 39 BEGIN failed--compilation aborted at ./OME/Remote/DeserializerXMLRPC.pm line 39. Can't locate Apache/Constants.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Remote/Apache/XMLRPC.pm line 15. BEGIN failed--compilation aborted at ./OME/Remote/Apache/XMLRPC.pm line 15. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache/Transport.pm line 19 BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache/Transport.pm line 19. Compilation failed in require at (eval 1) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./OME/Remote/Apache/HTTPProxy.pm line 20. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Remote/Apache/Transport.pm line 19 BEGIN failed--compilation aborted at ./OME/Remote/Apache/Transport.pm line 19. ./OME/Remote/Apache.pm syntax OK ./OME/Remote/Facades/GenericFacade.pm syntax OK ./OME/Remote/Facades/ConfigFacade.pm syntax OK ./OME/Remote/Facades/ImportFacade.pm syntax OK ./OME/Remote/Facades/ProjectFacade.pm syntax OK ./OME/Remote/Facades/AnnotationFacade.pm syntax OK ./OME/Remote/Facades/ModuleExecutionFacade.pm syntax OK ./OME/Remote/Facades/XMLUtils.pm syntax OK ./OME/Remote/Facades/ModuleRetrievalFacade.pm syntax OK ./OME/Remote/Facades/SessionFacade.pm syntax OK ./OME/Remote/Facades/HistoryFacade.pm syntax OK ./OME/Remote/Facades/DatasetFacade.pm syntax OK ./OME/Remote/Facades/ChainRetrievalFacade.pm syntax OK ./OME/Remote/Facades/AnalysisFacade.pm syntax OK ./OME/Remote/Facade.pm syntax OK ./OME/Remote/Apache2.pm syntax OK ./OME/Remote/Apache2/XMLRPC.pm syntax OK Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache2/Transport.pm line 20 BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache2/Transport.pm line 20. Compilation failed in require at (eval 1) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./OME/Remote/Apache2/HTTPProxy.pm line 20. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Remote/Apache2/Transport.pm line 20 BEGIN failed--compilation aborted at ./OME/Remote/Apache2/Transport.pm line 20. Can't locate Apache2.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/Transport.pm line 22. Compilation failed in require at (eval 80) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/HTTPProxy.pm line 20. Compilation failed in require at (eval 79) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./OME/Remote/Apache1_99.pm line 7. Base class package "XMLRPC::Serializer" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Remote/SerializerXMLRPC.pm line 39 BEGIN failed--compilation aborted at ./OME/Remote/SerializerXMLRPC.pm line 39. ./OME/Remote/DTO/ProjectAssembler.pm syntax OK ./OME/Remote/DTO/GenericAssembler.pm syntax OK ./OME/Remote/RPC2.pm syntax OK Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/Transport.pm line 20 BEGIN failed--compilation aborted at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Remote/Apache1_99/Transport.pm line 20. Compilation failed in require at (eval 1) line 3. ...propagated at /usr/lib/perl5/5.8.6/base.pm line 85. BEGIN failed--compilation aborted at ./OME/Remote/Apache1_99/HTTPProxy.pm line 20. Base class package "SOAP::Transport::HTTP::Server" is empty. (Perhaps you need to 'use' the module which defines that package first.) at ./OME/Remote/Apache1_99/Transport.pm line 20 BEGIN failed--compilation aborted at ./OME/Remote/Apache1_99/Transport.pm line 20. ./OME/LocalFile.pm syntax OK ./OME/Web/Logout.pm syntax OK ./OME/Web/CG_ConstructTemplate.pm syntax OK ./OME/Web/GuestMenuBuilder.pm syntax OK ./OME/Web/UploadImage.pm syntax OK ./OME/Web/GeneStageAnnotator.pm syntax OK ./OME/Web/ImportFiles.pm syntax OK ./OME/Web/CG_Display.pm syntax OK ./OME/Web/Search/OME_ModuleExecution.pm syntax OK ./OME/Web/Search/OME_Project.pm syntax OK ./OME/Web/Search/Experimenter.pm syntax OK ./OME/Web/DefaultMenuBuilder.pm syntax OK ./OME/Web/DefaultHeaderBuilder.pm syntax OK ./OME/Web/VisBio.pm syntax OK ./OME/Web/TrainClassifier.pm syntax OK ./OME/Web/GetGraphics.pm syntax OK ./OME/Web/XMLFileExport.pm syntax OK ./OME/Web/Wizards/ImportAndAnnotateImages.pm syntax OK ./OME/Web/ImportImages.pm syntax OK ./OME/Web/ImageAnnotationDetail.pm syntax OK ./OME/Web/DBObjRender.pm syntax OK ./OME/Web/FileTable.pm syntax OK ./OME/Web/CG_Search.pm syntax OK ./OME/Web/DatasetOnGoogleMaps.pm syntax OK ./OME/Web/DBObjCreate/Category.pm syntax OK ./OME/Web/DBObjCreate/OME_Project.pm syntax OK ./OME/Web/DBObjCreate/OME_Dataset.pm syntax OK ./OME/Web/TaskProgress.pm syntax OK ./OME/Web/Ping.pm syntax OK ./OME/Web/ImageAnnotationBrowser.pm syntax OK ./OME/Web/Login.pm syntax OK ./OME/Web/AccessManager.pm syntax OK ./OME/Web/TemplateManager.pm syntax OK ./OME/Web/Home.pm syntax OK ./OME/Web/SaveViewerSettings.pm syntax OK ./OME/Web/MultiObjCreate.pm syntax OK ./OME/Web/DBObjTable.pm syntax OK ./OME/Web/DBObjDetail.pm syntax OK ./OME/Web/DBObjDetail/__CategoryGroup.pm syntax OK ./OME/Web/DBObjDetail/__OME_ModuleExecution.pm syntax OK ./OME/Web/DBObjDetail/__OME_Project.pm syntax OK ./OME/Web/DBObjDetail/__OME_Image.pm syntax OK ./OME/Web/DBObjDetail/__OME_Module.pm syntax OK ./OME/Web/DBObjDetail/__Category.pm syntax OK ./OME/Web/DBObjDetail/__OME_Dataset.pm syntax OK ./OME/Web/Search.pm syntax OK ./OME/Web/DBObjRender/__DevelopmentalStage.pm syntax OK ./OME/Web/DBObjRender/__OME_ModuleExecution.pm syntax OK ./OME/Web/DBObjRender/__Husbandry.pm syntax OK ./OME/Web/DBObjRender/__ExternalLink.pm syntax OK ./OME/Web/DBObjRender/__OME_Image.pm syntax OK ./OME/Web/DBObjRender/__Probe.pm syntax OK ./OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm syntax OK ./OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm syntax OK ./OME/Web/DBObjRender/__OriginalFile.pm syntax OK ./OME/Web/DBObjRender/__OME_SemanticType_Element.pm syntax OK ./OME/Web/DBObjRender/__BayesNetClassifier.pm syntax OK ./OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm syntax OK ./OME/Web/DBObjRender/__Category.pm syntax OK ./OME/Web/DBObjRender/__Pixels.pm syntax OK ./OME/Web/DBObjRender/__OME_Task.pm syntax OK ./OME/Web/DBObjRender/__OME_DataTable_Column.pm syntax OK ./OME/Web/DBObjRender/__Fluorofor.pm syntax OK ./OME/Web/DBObjRender/__Objective.pm syntax OK ./OME/Web/DBObjRender/__SamplePreparation.pm syntax OK ./OME/Web/DBObjRender/__OME_DataTable.pm syntax OK ./OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm syntax OK ./OME/Web/DBObjRender/__Experimenter.pm syntax OK ./OME/Web/DBObjRender/__Instrument.pm syntax OK ./OME/Web/DBObjRender/__OME_Dataset.pm syntax OK ./OME/Web/CG_Annotator.pm syntax OK ./OME/Web/Authenticated.pm syntax OK ./OME/Web/MultiObjCreate/ExperimentProtocol.pm syntax OK Can't locate SVG/TT/Graph/TimeSeries.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Web/Graph/NodeExecutions.pm line 46. BEGIN failed--compilation aborted at ./OME/Web/Graph/NodeExecutions.pm line 46. Can't locate SVG/TT/Graph/TimeSeries.pm in @INC (@INC contains: /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Web/Graph/ChainExecution.pm line 46. BEGIN failed--compilation aborted at ./OME/Web/Graph/ChainExecution.pm line 46. ./OME/Web/FindSpots.pm syntax OK ./OME/Web/Util/Dataset.pm syntax OK ./OME/Web/Util/Category.pm syntax OK ./OME/Web/TableBrowse/FooterBuilder.pm syntax OK ./OME/Web/TableBrowse/HeaderBuilder.pm syntax OK ./OME/Web/TableBrowse.pm syntax OK ./OME/Web/ImageAnnotationTable.pm syntax OK ./OME/Web/DBObjCreate.pm syntax OK ./OME/Web/ExecuteChain.pm syntax OK ./OME/Web/ImageDetailAnnotator.pm syntax OK ./OME/Web/STdoc.pm syntax OK ./OME/Web/RunClassifier.pm syntax OK ./OME/Web/SpreadsheetImporterPrompt.pm syntax OK ./OME/Web/ImportModules.pm syntax OK ./OME/Web/GuestHeaderBuilder.pm syntax OK ./OME/DBConnection.pm syntax OK ./OME/LookupTable/Entry.pm syntax OK ./OME/Database/Delegate.pm syntax OK ./OME/Database/PostgresDelegate.pm syntax OK ./OME/SessionManager.pm syntax OK ./OME/Task.pm syntax OK ./OME/ModuleExecution.pm syntax OK ./OME/Remote.pm syntax OK ./OME/SemanticType/BootstrapExperimenter.pm syntax OK ./OME/SemanticType/BootstrapExperimenterGroup.pm syntax OK ./OME/SemanticType/BootstrapGroup.pm syntax OK ./OME/SemanticType/Superclass.pm syntax OK ./OME/SemanticType/BootstrapRepository.pm syntax OK ./OME/SemanticType/Element.pm syntax OK ./OME/Module/FormalOutput.pm syntax OK ./OME/Module/Category.pm syntax OK ./OME/Module/FormalInput.pm syntax OK ./OME/AnalysisChain.pm syntax OK ./OME/Util/Data/dbAdmin.pm syntax OK ./OME/Util/Data/Export.pm syntax OK ./OME/Util/Data/Delete.pm syntax OK ./OME/Util/Import.pm syntax OK ./OME/Util/Annotate/Ai_compound_importer.pm syntax OK ./OME/Util/Annotate/SpreadsheetReader.pm syntax OK ./OME/Util/Annotate/SpreadsheetWriter.pm syntax OK ./OME/Util/Annotate/INCA_analysis_importer.pm syntax OK ./OME/Util/Annotate/AnnotationWizards.pm syntax OK ./OME/Util/cURL.pm syntax OK ./OME/Util/Dev/ChainStats.pm syntax OK ./OME/Util/Dev/Lint.pm syntax OK ./OME/Util/Dev/Templates.pm syntax OK Can't locate OME/Matlab.pm in @INC (@INC contains: /OME/Inline/lib /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.6 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/i386-linux-thread-multi /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.5 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.4 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine/5.8.3 /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportEngine /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi /usr/lib/perl5/5.8.6 .) at ./OME/Util/Dev/Classifier.pm line 56. BEGIN failed--compilation aborted at ./OME/Util/Dev/Classifier.pm line 56. ./OME/Util/OMECommander.pm syntax OK ./OME/Util/Dev.pm syntax OK ./OME/Util/Commands.pm syntax OK ./OME/Util/Annotate.pm syntax OK ./OME/Util/ExecuteChain.pm syntax OK ./OME/Util/Admin/GroupAdmin.pm syntax OK ./OME/Util/Admin/Uninstall.pm syntax OK ./OME/Util/Admin/UserAdmin.pm syntax OK ./OME/Util/Admin/OMEAdmin.pm syntax OK ./OME/Util/Admin/Configure.pm syntax OK ./OME/Util/Top.pm syntax OK ./OME/AnalysisPath/Map.pm syntax OK ./OME/Fork.pm syntax OK ./OME/Configuration/Variable.pm syntax OK ./OME/LookupTable.pm syntax OK ./OME/UserState.pm syntax OK ./OME/Project.pm syntax OK ./OME/ImportExport/DataHistoryImport.pm syntax OK ./OME/ImportExport/SemanticTypeExport.pm syntax OK ./OME/ImportExport/ResolveFiles.pm syntax OK ./OME/ImportExport/SemanticTypeImport.pm syntax OK ./OME/ImportExport/Repacker/Repacker.pm syntax OK ./OME/ImportExport/DataHistoryExport.pm syntax OK Too many arguments for OME::ImportExport::HierarchyExport::ODBC2XML_timestamp at ./OME/ImportExport/HierarchyExport.pm line 482, near ")) " Too many arguments for OME::ImportExport::HierarchyExport::ODBC2XML_timestamp at ./OME/ImportExport/HierarchyExport.pm line 605, near "))" ./OME/ImportExport/HierarchyExport.pm had compilation errors. ./OME/ImportExport/HierarchyImport.pm syntax OK ./OME/ImportExport/ChainImport.pm syntax OK ./OME/ImportExport/ModuleImport.pm syntax OK ./OME/ImportExport/ChainExport.pm syntax OK ./OME/AnalysisChainExecution.pm syntax OK ./OME/AnalysisPath.pm syntax OK ./OME/AnalysisChainExecution/NodeExecution.pm syntax OK ./OME.pm syntax OK ./PostgresDelegate.pm syntax OK