<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">Hi Bernd,<DIV><BR class="khtml-block-placeholder"></DIV><DIV>Do you see your INCellRunXML importer in the DB?</DIV><DIV><SPAN class="Apple-tab-span" style="white-space:pre"> </SPAN>select * from configuration where name='import_formats';</DIV><DIV>If not, manually update the configuration table and see if this fixes your import problems.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>I am pretty sure the ApacheConfigTask.pm error has nothing to do with your importer problem.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Tom</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV><DIV><DIV>On Aug 24, 2006, at 2:48 PM, Bernd Jagla wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"> <DIV class="Section1"><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">I am sorry, but I can’t remember how to get the developer version to work.<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Here is what I have done:<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">I installed OME with all the defaults (including Yes to Apache Developer configuration and Web-UI HTML Templates developer configuration). I added the line <O:P></O:P></SPAN></FONT></P><P class="MsoNormal" style="text-indent:12.0pt"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">OME::ImportEngine::INCellRunXML<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Into CoreDatabasesTablesTasks.pm (first item in list)<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Reinstalled using –y<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">I added line <O:P></O:P></SPAN></FONT></P><P class="MsoNormal" style="text-indent:12.0pt"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">print "in INCellRunfile" . $filename ."\n";<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">under getGroups in INCellRunXML.pm<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Now, all I get is <O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">[bernd@BERND-HOME OME]$ ome import -r /home/bernd/TestImages/Ai/DrugStudy/041230Plate5_2/041230Plate5_2.xml <O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Importing files<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"> 1/4: [IN PROGRESS] Starting import<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Deleting 041230Plate5_2.xml<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"> 4/4: [FINISHED] Imported 0 images from 0 files. 1 scanned. 1 unknown format, 0 duplicates, 0 errors.<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Exiting...<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt"> 4/4: [FINISHED] Imported 0 images from 0 files. 1 scanned. 1 unknown format, 0 duplicates, 0 errors.<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="2" face="Arial"><SPAN style="font-size:10.0pt">Exiting...<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">With no sign that INCellRunXML has ever executed…<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">Then I did a cvs update and install (I had to drop the ome database because of errors from moving to the 26 version). But still no luck.<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">Now I am a bit frustrated and would really like a hand in this.<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">Thanks a lot <O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">Bernd<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">PS. The only clue I found is this: <O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">[bernd@BERND-HOME OME]$ !1155<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">perl -c src/perl2/OME/Install/CoreDatabaseTablesTask.pm <O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.6/OME/Install/ApacheConfigTask.pm line 75.<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">src/perl2/OME/Install/CoreDatabaseTablesTask.pm syntax OK<O:P></O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt"><O:P> </O:P></SPAN></FONT></P><P class="MsoNormal"><FONT size="3" face="Arial"><SPAN style="font-size:12.0pt">but I didn’t do in ApacheConfigTask.pm…<O:P></O:P></SPAN></FONT></P> </DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">ome-devel mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</A></DIV> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>