Hi,<br>
<br>
Lately I switched my main development machine from Debian to Ubuntu (very similar, since Ubuntu is Debian-derived).<br>
<br>
I have brought the OME website Debian/Ubuntu documentation up to date,
and added some clarifications (such as the trouble with DBD::Pg, and
how to make Postgres work on Ubuntu Breezy). I also updated the master
list of Perl modules on the prerequisites page, since it was quite out
of date.<br>
<br>
I have committed some improvements to the OME install script to address
a couple of issues. First, I eliminated the "Use of uninitialized value
in print" messages when a default value is undefined (<a href="http://Terminal.pm">Terminal.pm</a>).
More importantly, I added the option to have the installer
automatically drop the database for you if one already exists from a
previous failed install (CoreDatabaseTablesTask.pm). It seems to work
on my system; let me know if it causes any problems.<br>
<br>
Three issues remain for me, with #3 being by far the most critical. I
thought I'd run them by the list before digging too much deeper.<br>
<br>
1) During Apache Setup, I receive the errors:<br>
<br>
In PID 10408, Error calling UpdateOMEIS: Could not open Pixels/lastPix (perhaps there is no Pixels repository yet?)<br>
System Error: No such file or directory<br>
In PID 10408, Error calling UpdateOMEIS: Could not get last Pixels ID (perhaps there are none?)<br>
System Error: Bad file descriptor<br>
<br>
It looks like these are from Pixels.c in OMEIS. But of course those
things do not exist for a fresh install. I would say that ideally, the
messages should be suppressed in that case, but was unsure how
difficult doing so would be.<br>
<br>
2) My Apache2 document root and cgi-bin directories are not properly detected:<br>
<br>
Apache cgi-bin directory : []: /usr/lib/cgi-bin<br>
Install data server (omeds) ? [y/n]:<br>
Install web server ? [y/n]:<br>
Copy index.html to : []: /var/www<br>
<br>
Typing them in manually works fine, but it seems odd that these
standard (I thought) directories are causing trouble. (I do not mind
looking into making these defaults work properly in the installer, but
have not yet figured out how to do so.)<br>
<br>
3) Most critically, my install dies during Bootstrapping Database, as follows:<br>
<br>
Generating request for <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Getting response from <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Parsing response from <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Repository is configured correctly<br>
SUCCESS LOADING XML FILE "/home/curtis/OME/src/xml/OME/Annotations/InstallationModule.ome"<br>
SUCCESS LOADING XML FILE "/home/curtis/OME/src/xml/OME/Core/Experimenter.ome"<br>
ERROR LOADING XML FILE "/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome" -- OUTPUT: "500 EOF when chunk header expected<br>
at /home/curtis/OME/src/perl2/OME/Image/Server.pm line 474<br>
OME::Image::Server::__callOMEIS('OME::Image::Server', 'Method',
'UploadFile', 'File',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome') called at
/home/curtis/OME/src/perl2/OME/Image/Server.pm line 1060<br>
OME::Image::Server::uploadFile('OME::Image::Server',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome') called at
/home/curtis/OME/src/perl2/OME/Image/Server/File.pm line 128<br>
OME::Image::Server::File::upload('OME::Image::Server::File',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome') called at
/home/curtis/OME/src/perl2/OME/Tasks/OMEImport.pm line 138<br>
OME::Tasks::OMEImport::importFile('OME::Tasks::OMEImport=HASH(0x99ffcb0)',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome',
'NoDuplicates', 1, 'IgnoreAlterTableErrors', 1) called at
/home/curtis/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line
1037<br>
eval {...} called at /home/curtis/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 1036<br>
OME::Install::CoreDatabaseTablesTask::load_xml_bootstrap('OME::Session=HASH(0x99f2db8)')
called at
/home/curtis/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line
1521<br>
<br>
It's weird because the first couple of OME files are loaded fine. I
checked, and Repository.ome is definitely present in my source tree,
with the same permissions as the other OME files. So I'm not sure how
to proceed in tackling this problem.<br>
<br>
Could it be because I am running Apache2? I remember awhile back it was
discouraged to use Apache2 with OME, but was under the impression that
is no longer the case.<br>
<br>
Any thoughts are greatly appreciated.<br>
<br>
-Curtis<br>
<br>
=================================<br>
Full console output:<br>
=================================<br>
<br>
--------------<br>
Apache Setup<br>
--------------<br>
<br>
(All verbose information logged in /var/tmp/OME/install/ApacheConfigTask.log)<br>
<br>
OME Apache web server configuration is a critical part of your OME install.<br>
OME's web interface, remote clients and image server all use this<br>
infrastructure to communicate. If you are unsure of a particular question,<br>
please choose the default as that will be more than adequate for most<br>
people.<br>
<br>
In PID 15287, Error calling UpdateOMEIS: Could not open Pixels/lastPix (perhaps there is no Pixels repository yet?)<br>
System Error: No such file or directory<br>
In PID 15287, Error calling UpdateOMEIS: Could not get last Pixels ID (perhaps there are none?)<br>
System Error: Bad file descriptor<br>
Configure Apache server? [y/n]:<br>
Your OME installation can be configured for development or deployment.<br>
For developers, Apache can be configured to serve OME out of the<br>
installation directory (currently /home/curtis/OME/src/perl2).<br>
This configuration lets modifications to OME code be picked up immediately<br>
by Apache without having to re-run the installer.<br>
For deployment (the default), Apache will be configured to serve OME from<br>
the operating system's Perl directory, ignoring any subsequent<br>
modifications in /home/curtis/OME/src/perl2.<br>
<br>
Use OME Apache-2.x configuration for developers? [y/n]: y<br>
Install image server (omeis) ? [y/n]:<br>
Apache cgi-bin directory : []: /usr/lib/cgi-bin<br>
Install data server (omeds) ? [y/n]:<br>
Install web server ? [y/n]:<br>
Copy index.html to : []: /var/www<br>
Use HTML Templates configuration for developers ? [y/n]: y<br>
Look for HTML Templates in: [/home/curtis/OME/src/html/Templates]:<br>
<br>
<br>
Apache configuration:<br>
Configure Apache?: yes<br>
Developer configuration: yes<br>
Server restart?: yes<br>
Install OME servers:<br>
Images (omeis): yes<br>
Data (omeds): yes<br>
Web: yes<br>
Apache directories:<br>
httpd binary: /usr/sbin/apache2<br>
apachectl binary: /usr/sbin/apache2ctl<br>
DocumentRoot: /var/www<br>
cgi-bin: /usr/lib/cgi-bin<br>
Web-UI HTML Templates:<br>
Developer configuration: yes<br>
HTML Templates directory: /home/curtis/OME/src/html/Templates<br>
<br>
Are these values correct ? [y/n]:<br>
Testing Apache configuration<br>
\__ mod_perl [SUCCESS].<br>
\__ omeis [SUCCESS].<br>
Dropping umask to "0002".<br>
Installing HTML Templates for Web-UI<br>
\__ Verifying structure of /home/curtis/OME/src/html/Templates [SKIPPING].<br>
\__ Updating user templates [SKIPPING].<br>
\__ Updating system templates [SKIPPING].<br>
\__ Setting owner for templates to [SKIPPING].<br>
\__ Setting permissions for user templates to [SKIPPING].<br>
\__ Setting permissions for system templates to [SKIPPING].<br>
<br>
---------------------------<br>
Optional OME-MATLAB Setup<br>
---------------------------<br>
<br>
(All verbose information logged in /var/tmp/OME/install/MatlabTask.log)<br>
<br>
Install analysis engine interface to MATLAB ? [y/n]:<br>
<br>
MATLAB Perl API configuration:<br>
Install MATLAB Perl API?: no<br>
<br>
Are these values correct ? [y/n]:<br>
--------------------<br>
Database Bootstrap<br>
--------------------<br>
<br>
(All verbose information logged in /var/tmp/OME/install/CoreDatabaseTablesTask.log)<br>
<br>
Finding DB configuration in installation environment [USING DEFAULT].<br>
Database connection information<br>
N.B.: The database host must already be installed and running.<br>
It must already be configured for accepting the connection<br>
specified here, or a superuser connection from user "postgres".<br>
Database Delegate Class: OME::Database::PostgresDelegate<br>
Database Name: ome<br>
Host: undefined (local)<br>
Port: undefined (default)<br>
Username for DB connection: undefined (process owner)<br>
<br>
Are these values correct ? [y/n]:<br>
Creating OME PostgreSQL SUPERUSER (ome)[SUCCESS].<br>
Creating Apache PostgreSQL SUPERUSER (www-data)[SUCCESS].<br>
Creating Admin PostgreSQL SUPERUSER (curtis)[SUCCESS].<br>
Checking database<br>
>From DB, got DB_Version = '2.22-Installing'<br>
Found an existing ome database, but apparently installation<br>
failed before it was complete.<br>
The existing ome database must be dropped before continuing.<br>
WARNING: Do not do this if you have an existing functional database,<br>
especially if you don't have a current backup!!!<br>
Are you sure you want to proceed ? [y/n]: y<br>
Database dropped successfully.<br>
Creating PostgreSQL database ome... [Done.]<br>
Fixing OID/INTEGER compatability bug...WARNING: changing return
type of function plpgsql_call_handler from "opaque" to
"language_handler"<br>
[Done.]<br>
Loading the database schema<br>
\__ OME::LookupTable NOTICE: CREATE TABLE / PRIMARY KEY
will create implicit index "lookup_tables_pkey" for table
"lookup_tables"<br>
[SUCCESS].<br>
\__ OME::LookupTable::Entry NOTICE: CREATE TABLE / PRIMARY
KEY will create implicit index "lookup_table_entries_pkey" for table
"lookup_table_entries"<br>
[SUCCESS].<br>
\__ OME::DataTable NOTICE: CREATE TABLE / PRIMARY KEY will
create implicit index "data_tables_pkey" for table "data_tables"<br>
[SUCCESS].<br>
\__ OME::DataTable::Column NOTICE: CREATE TABLE / PRIMARY
KEY will create implicit index "data_columns_pkey" for table
"data_columns"<br>
[SUCCESS].<br>
\__ OME::SemanticType NOTICE: CREATE TABLE / PRIMARY KEY
will create implicit index "semantic_types_pkey" for table
"semantic_types"<br>
NOTICE: CREATE TABLE / UNIQUE will create implicit index "semantic_types_name_key" for table "semantic_types"<br>
[SUCCESS].<br>
\__ OME::SemanticType::Element NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "semantic_elements_pkey" for
table "semantic_elements"<br>
[SUCCESS].<br>
\__ OME::SemanticType::BootstrapExperimenter NOTICE:
CREATE TABLE / PRIMARY KEY will create implicit index
"experimenters_pkey" for table "experimenters"<br>
NOTICE: CREATE TABLE / UNIQUE will create implicit index "experimenters_ome_name_key" for table "experimenters"<br>
[SUCCESS].<br>
\__ OME::SemanticType::BootstrapGroup NOTICE: CREATE TABLE
/ PRIMARY KEY will create implicit index "groups_pkey" for table
"groups"<br>
[SUCCESS].<br>
\__ OME::SemanticType::BootstrapExperimenterGroup NOTICE:
CREATE TABLE / PRIMARY KEY will create implicit index
"experimenter_group_map_pkey" for table "experimenter_group_map"<br>
[SUCCESS].<br>
\__ OME::SemanticType::BootstrapRepository NOTICE: CREATE
TABLE / PRIMARY KEY will create implicit index "repositories_pkey" for
table "repositories"<br>
NOTICE: CREATE TABLE / UNIQUE will create implicit index "repositories_image_server_url_key" for table "repositories"<br>
NOTICE: CREATE TABLE / UNIQUE will create implicit index "repositories_path_key" for table "repositories"<br>
[SUCCESS].<br>
\__ OME::Dataset NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index "datasets_pkey" for table "datasets"<br>
[SUCCESS].<br>
\__ OME::Project NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index "projects_pkey" for table "projects"<br>
[SUCCESS].<br>
\__ OME::Project::DatasetMap [SUCCESS].<br>
\__ OME::Image NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index "images_pkey" for table "images"<br>
[SUCCESS].<br>
\__ OME::Image::DatasetMap [SUCCESS].<br>
\__ OME::Feature NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index "features_pkey" for table "features"<br>
[SUCCESS].<br>
\__ OME::UserState NOTICE: CREATE TABLE / PRIMARY KEY will
create implicit index "ome_sessions_pkey" for table "ome_sessions"<br>
[SUCCESS].<br>
\__ OME::ViewerPreferences NOTICE: CREATE TABLE / PRIMARY
KEY will create implicit index "viewer_preferences_pkey" for table
"viewer_preferences"<br>
[SUCCESS].<br>
\__ OME::LSID [SUCCESS].<br>
\__ OME::Module::Category NOTICE: CREATE TABLE / PRIMARY
KEY will create implicit index "module_categories_pkey" for table
"module_categories"<br>
[SUCCESS].<br>
\__ OME::Module NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index "modules_pkey" for table "modules"<br>
[SUCCESS].<br>
\__ OME::Module::FormalInput NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "formal_inputs_pkey" for table
"formal_inputs"<br>
[SUCCESS].<br>
\__ OME::Module::FormalOutput NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "formal_outputs_pkey" for table
"formal_outputs"<br>
[SUCCESS].<br>
\__ OME::AnalysisChain NOTICE: CREATE TABLE / PRIMARY KEY
will create implicit index "analysis_chains_pkey" for table
"analysis_chains"<br>
[SUCCESS].<br>
\__ OME::AnalysisChain::Node NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "analysis_chain_nodes_pkey" for
table "analysis_chain_nodes"<br>
[SUCCESS].<br>
\__ OME::AnalysisChain::Link NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "analysis_chain_links_pkey" for
table "analysis_chain_links"<br>
[SUCCESS].<br>
\__ OME::AnalysisPath NOTICE: CREATE TABLE / PRIMARY KEY
will create implicit index "analysis_paths_pkey" for table
"analysis_paths"<br>
[SUCCESS].<br>
\__ OME::AnalysisPath::Map [SUCCESS].<br>
\__ OME::Analysis::Engine::Worker NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "analysis_workers_pkey" for
table "analysis_workers"<br>
[SUCCESS].<br>
\__ OME::ModuleExecution NOTICE: CREATE TABLE / PRIMARY
KEY will create implicit index "module_executions_pkey" for table
"module_executions"<br>
[SUCCESS].<br>
\__ OME::ModuleExecution::ActualInput NOTICE: CREATE TABLE
/ PRIMARY KEY will create implicit index "actual_inputs_pkey" for table
"actual_inputs"<br>
[SUCCESS].<br>
\__ OME::ModuleExecution::SemanticTypeOutput NOTICE:
CREATE TABLE / PRIMARY KEY will create implicit index
"semantic_type_outputs_pkey" for table "semantic_type_outputs"<br>
[SUCCESS].<br>
\__ OME::ModuleExecution::ParentalOutput NOTICE: CREATE
TABLE / PRIMARY KEY will create implicit index "parental_outputs_pkey"
for table "parental_outputs"<br>
[SUCCESS].<br>
\__ OME::ModuleExecution::VirtualMEXMap [SUCCESS].<br>
\__ OME::AnalysisChainExecution NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "analysis_chain_executions_pkey"
for table "analysis_chain_executions"<br>
[SUCCESS].<br>
\__ OME::AnalysisChainExecution::NodeExecution NOTICE:
CREATE TABLE / PRIMARY KEY will create implicit index
"analysis_node_executions_pkey" for table "analysis_node_executions"<br>
[SUCCESS].<br>
\__ OME::Task NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index "tasks_pkey" for table "tasks"<br>
[SUCCESS].<br>
\__ OME::Configuration::Variable NOTICE: CREATE TABLE /
PRIMARY KEY will create implicit index "configuration_pkey" for table
"configuration"<br>
[SUCCESS].<br>
----------------------------<br>
Initializing configuration<br>
----------------------------<br>
<br>
The installer will now finalize your OME environment by asking you for an<br>
LSID authority and to provide an initial user for you to use with the web<br>
interface and Java clients.<br>
<br>
The LSID authority is a type of universal identification for your OME<br>
environment and it should be defined as the FQDN (fully qualified domain<br>
name) of the install machine; "<a href="http://myome.openmicroscopy.org">myome.openmicroscopy.org</a>" for example. If<br>
you are unsure of what to enter here ask your network/systems administrator<br>
or use the default as that will be adequate for most people.<br>
<br>
LSID Authority [skyking]: <a href="http://skyking.microscopy.wisc.edu">skyking.microscopy.wisc.edu</a><br>
-----------------------<br>
Initial user creation<br>
-----------------------<br>
<br>
This user will be yourself or the person who will administer the OME<br>
environment after installation. It is internal to OME. You will use this<br>
username and password to use OME and add new OME users and groups. The<br>
default data directory option is the path on this machine which contains<br>
(or will contain) the proprietary image files (greyscale TIFF's for<br>
example) you wish to import into OME. An example default data directory<br>
would be "/home/joe/my_ome_images".<br>
<br>
First name: Curtis<br>
Last name: Rueden<br>
Username: curtis<br>
E-mail address: curtis@skyking<br>
Default data directory: /home/curtis<br>
<br>
Are these values correct ? [y/n]:<br>
Set password for OME user curtis:<br>
Verify:<br>
------------------------<br>
Bootstrapping Database<br>
------------------------<br>
<br>
\__ Creating repository object<br>
<br>
What is the URL of the OME Image server (omeis) ?
[<a href="http://skyking/cgi-bin/omeis">http://skyking/cgi-bin/omeis</a>]:
<a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Checking OMEIS repository [SUCCESS].<br>
Importing bootstrap XML<br>
\__
/home/curtis/OME/src/xml/OME/Annotations/InstallationModule.ome
OME::Tasks::LSIDManager::getRemoteObject() is not implemented. at
/home/curtis/OME/src/perl2/OME/ImportExport/ModuleImport.pm line 183<br>
[SUCCESS].<br>
\__ /home/curtis/OME/src/xml/OME/Core/Experimenter.ome [SUCCESS].<br>
\__ /home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome [FAILURE].<br>
<br>
<br>
Errors executing task: Error loading XML file
"/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome", see
CoreDatabaseTablesTask.log details. at (eval 201) line 1<br>
<br>
at ./install.pl line 81<br>
main::run_tasks() called at ./install.pl line 265<br>
# Looks like your test died before it could output anything.<br>
<br>
<br>
=================================<br>
/var/tmp/OME/install/CoreDatabaseTablesTask.log:<br>
=================================<br>
<br>
Creating OME PostgreSQL SUPERUSER (ome)<br>
Found an existing ome database in the middle of being updated<br>
<br>
SUCCESS LOADING CLASS "OME::LookupTable"<br>
SUCCESS LOADING CLASS "OME::LookupTable::Entry"<br>
SUCCESS LOADING CLASS "OME::DataTable"<br>
SUCCESS LOADING CLASS "OME::DataTable::Column"<br>
SUCCESS LOADING CLASS "OME::SemanticType"<br>
SUCCESS LOADING CLASS "OME::SemanticType::Element"<br>
SUCCESS LOADING CLASS "OME::SemanticType::BootstrapExperimenter"<br>
SUCCESS LOADING CLASS "OME::SemanticType::BootstrapGroup"<br>
SUCCESS LOADING CLASS "OME::SemanticType::BootstrapExperimenterGroup"<br>
SUCCESS LOADING CLASS "OME::SemanticType::BootstrapRepository"<br>
SUCCESS LOADING CLASS "OME::Dataset"<br>
SUCCESS LOADING CLASS "OME::Project"<br>
SUCCESS LOADING CLASS "OME::Project::DatasetMap"<br>
SUCCESS LOADING CLASS "OME::Image"<br>
SUCCESS LOADING CLASS "OME::Image::DatasetMap"<br>
SUCCESS LOADING CLASS "OME::Feature"<br>
SUCCESS LOADING CLASS "OME::UserState"<br>
SUCCESS LOADING CLASS "OME::ViewerPreferences"<br>
SUCCESS LOADING CLASS "OME::LSID"<br>
SUCCESS LOADING CLASS "OME::Module::Category"<br>
SUCCESS LOADING CLASS "OME::Module"<br>
SUCCESS LOADING CLASS "OME::Module::FormalInput"<br>
SUCCESS LOADING CLASS "OME::Module::FormalOutput"<br>
SUCCESS LOADING CLASS "OME::AnalysisChain"<br>
SUCCESS LOADING CLASS "OME::AnalysisChain::Node"<br>
SUCCESS LOADING CLASS "OME::AnalysisChain::Link"<br>
SUCCESS LOADING CLASS "OME::AnalysisPath"<br>
SUCCESS LOADING CLASS "OME::AnalysisPath::Map"<br>
SUCCESS LOADING CLASS "OME::Analysis::Engine::Worker"<br>
SUCCESS LOADING CLASS "OME::ModuleExecution"<br>
SUCCESS LOADING CLASS "OME::ModuleExecution::ActualInput"<br>
SUCCESS LOADING CLASS "OME::ModuleExecution::SemanticTypeOutput"<br>
SUCCESS LOADING CLASS "OME::ModuleExecution::ParentalOutput"<br>
SUCCESS LOADING CLASS "OME::ModuleExecution::VirtualMEXMap"<br>
SUCCESS LOADING CLASS "OME::AnalysisChainExecution"<br>
SUCCESS LOADING CLASS "OME::AnalysisChainExecution::NodeExecution"<br>
SUCCESS LOADING CLASS "OME::Task"<br>
SUCCESS LOADING CLASS "OME::Configuration::Variable"<br>
Checking repository<br>
Repository URL: <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
ENVIRONMENT->omeis_url(): <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Getting an LWP user agent<br>
Generating request for <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Getting response from <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Parsing response from <a href="http://skyking.microscopy.wisc.edu/cgi-bin/omeis">http://skyking.microscopy.wisc.edu/cgi-bin/omeis</a><br>
Repository is configured correctly<br>
SUCCESS LOADING XML FILE "/home/curtis/OME/src/xml/OME/Annotations/InstallationModule.ome"<br>
SUCCESS LOADING XML FILE "/home/curtis/OME/src/xml/OME/Core/Experimenter.ome"<br>
ERROR LOADING XML FILE "/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome" -- OUTPUT: "500 EOF when chunk header expected<br>
at /home/curtis/OME/src/perl2/OME/Image/Server.pm line 474<br>
OME::Image::Server::__callOMEIS('OME::Image::Server', 'Method',
'UploadFile', 'File',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome') called at
/home/curtis/OME/src/perl2/OME/Image/Server.pm line 1060<br>
OME::Image::Server::uploadFile('OME::Image::Server',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome') called at
/home/curtis/OME/src/perl2/OME/Image/Server/File.pm line 128<br>
OME::Image::Server::File::upload('OME::Image::Server::File',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome') called at
/home/curtis/OME/src/perl2/OME/Tasks/OMEImport.pm line 138<br>
OME::Tasks::OMEImport::importFile('OME::Tasks::OMEImport=HASH(0x99ffcb0)',
'/home/curtis/OME/src/xml/OME/Core/OMEIS/Repository.ome',
'NoDuplicates', 1, 'IgnoreAlterTableErrors', 1) called at
/home/curtis/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line
1037<br>
eval {...} called at /home/curtis/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 1036<br>
OME::Install::CoreDatabaseTablesTask::load_xml_bootstrap('OME::Session=HASH(0x99f2db8)')
called at
/home/curtis/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line
1521<br>
OME::Install::CoreDatabaseTablesTask::execute() called at (eval 201) line 1<br>
eval 'OME::Install::CoreDatabaseTablesTask::execute()<br>
;' called at ./install.pl line 80<br>
main::run_tasks() called at ./install.pl line 265<br>
"<br>
<br>