<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">Hi,<DIV><BR class="khtml-block-placeholder"></DIV><DIV>You did almost everything right.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>A CVS checkout basically is equivalent to an OME install package. You have to install OME (by running perl install.pl)</DIV><DIV>even after checkout.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>So you have to check out into your home directory. e.g. /home/tmacur1 or /home/guanghui</DIV><DIV>instead of / as you currently did.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Then you have to install by running sudo perl /home/tmacur1/OME/install.pl</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>so now do</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>rm -rf /OME (To remove your current OME checkout -- it's in the wrong place)</DIV><DIV>cd /home/guanghui<FONT class="Apple-style-span" size="2"> (to move to your home directory)</FONT></DIV><DIV><FONT class="Apple-style-span" size="2"><SPAN class="Apple-style-span" style="font-size: 10px;">cvs -z3 -d ':pserver:<A href="mailto:anoncvs@cvs.openmicroscopy.org.uk">anoncvs@cvs.openmicroscopy.org.uk</A>:/ome' checkout OME (to do a current checkout)</SPAN></FONT></DIV><DIV>cd OME</DIV><DIV>sudo perl install.pl (to install OME).</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Let me know if you need more info or have further questions,</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Tom</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV><BR><DIV><DIV>On May 30, 2006, at 5:13 PM, #HU GUANGHUI# wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"> <BR><P><FONT size="2">Hi Tom,<BR> <BR> Thanks for the quick reply!<BR> <BR> As it is my first time using cvs, this is what i've done.<BR> (I'm using fedora core 3 in case the platform matters)<BR> As the root, under the "/" directory, i ran these commands:<BR> <BR> $ cvs -d ':pserver:<A href="mailto:anoncvs@cvs.openmicroscopy.org.uk">anoncvs@cvs.openmicroscopy.org.uk</A>:/ome' login<BR> CVS password:anoncvs<BR> $ cvs -z3 -d ':pserver:<A href="mailto:anoncvs@cvs.openmicroscopy.org.uk">anoncvs@cvs.openmicroscopy.org.uk</A>:/ome' checkout OME<BR> <BR> Then the cvs did a lot of updating and checkout.<BR> <BR> Next I ran this, under "/OME" the directory where OME is installed</FONT><FONT size="2"><BR> $ cvs update -d<BR> <BR> However, i saw warning messages like the following<BR> <BR> cvs update: Updating conf<BR> cvs update: warning: cannot write history file /ome/CVSROOT/history: Permission denied<BR> cvs update: move away conf/httpd.ome.conf; it is in the way<BR> C conf/httpd.ome.conf<BR> cvs update: warning: cannot write history file /ome/CVSROOT/history: Permission denied<BR> cvs update: move away conf/httpd.omeds-dev.conf; it is in the way<BR> C conf/httpd.ome.conf<BR> <BR> and the list goes on...<BR> And when i did a "slocate CVSROOT", it was not able to find such directory.<BR> So I was afraid I did something wrong, or misunderstand the instructions.<BR> <BR> Also, I understand OME can be "reinstalled" if so how am I going to perform the reinstallation?<BR> Is it by running the script "install.pl" that is found in the directory of the installed OME?<BR> <BR> Thanks for your time, I'm also eager to get the integration up and running.<BR> <BR> Cheers,<BR> GuangHui<BR> <BR> -----Original Message-----<BR> From: Tom Macura [<A href="mailto:tm289@cam.ac.uk">mailto:tm289@cam.ac.uk</A>]<BR> Sent: Sun 5/28/2006 3:24 AM<BR> To: #HU GUANGHUI#<BR> Subject: Re: Matlab Integration with OME<BR> <BR> Hi GuangHui,<BR> <BR> If you want to use OME with MATLAB you really have no choice but to <BR> get the latest version of OME from CVS (info at <BR> cvs.openmicroscopy.org.uk).<BR> The current release (2.4.0) is over a year old. There have been many <BR> many improvements to the OME/MATLAB coupling. A new release is in <BR> the pipeline but I have no idea when it will happen.<BR> <BR> The CVS version of OME is pretty good -- don't worry about bugs the <BR> MATLAB part is very thoroughly tested (because we use it all the time <BR> as infrastructure for our own research) Unfortunately they are always <BR> unknown problems.<BR> <BR> You might want to look at the paper I wrote about OME/MATLAB <BR> coupling: <A href="http://www.openmicroscopy.org.uk/publications/">http://www.openmicroscopy.org.uk/publications/</A><BR> MatlabHandler.pdf<BR> <BR> Hope things work for you. Don't hesitate to write back. I'm very <BR> excited you're interested in OME+MATLAB and want to help you,<BR> <BR> Best,<BR> <BR> Tom<BR> <BR> </FONT> </P></BLOCKQUOTE><BLOCKQUOTE type="cite"> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>