[ome-devel] support on dm4 files

[Abraham Cano]

Hi David,

I moved the A----0018.DM4 single file to a separate directory (had it
stored with several more DM4s), opened the Bio-Formats plugin windows, and
imported the file using 'Bio-formats importer'..Sucess!!!
Still, I cannot see the scale bar but I'll use the one included in the TIF
file as a reference (considering appropiate resizing according to image
resolution)


Abraham

2018-02-08 17:15 GMT-06:00 Abraham Cano <abrahamcano76 at gmail.com>:

> The Gatan DM4 image I pretend to open should look like the following TIF
> (both attached as Google Drive links) ​
>  A----0018.tif
> <https://drive.google.com/file/d/1Zciiq8QYZ27wyAwesjSx-AQdaS0B_ML8/view?usp=drive_web>
> ​​
>  A----0018.dm4
> <https://drive.google.com/file/d/1qUUccvYD3wyDeBH9DmWzTpYySpdqIZHK/view?usp=drive_web>
> ​
>
> 2018-02-08 16:29 GMT-06:00 Abraham Cano <abrahamcano76 at gmail.com>:
>
>> Hi  David
>>
>> I have tried to open a DM4 file with Image J an Fiji, latest downloads,
>> an also with the latest Bioformats package from here:
>>
>>
>> http://www.openmicroscopy.org/bio-formats/downloads/
>>
>>
>>
>> After running bioformats_package.jar, I try to open any dm4 file and I
>> can only see gray frames if setting first axis field to 30. Please see
>> attached snapshots in BMP format; in this case setting axis field values to
>> 1 led to the final snapshot.
>>
>> The current system is a Dell Optiplex 9020, Win 10 Enterprise, 64 bit, 4
>> GB RAM, Intel Core i7-4770 @ 3.4 Ghz
>>
>> Many thanks in advance!
>>
>>
>> Abraham
>>
>> 2018-02-08 5:27 GMT-06:00 David Gault (Staff) <d.gault at dundee.ac.uk>:
>>
>>> Hi Abraham,
>>>
>>> You should also be able to read DM4 files with Bio-Formats. Using the
>>> latest Bio-Formats release with FIJI I was able to open the attached file
>>> provided.
>>> Which version of ImageJ and the Bio-Formats plugin are you using?
>>>
>>> Version information can be found in Help -> About Plugins -> Bio-Formats
>>> Plugins
>>>
>>> With Thanks,
>>> David Gault
>>>
>>> > On 8 Feb 2018, at 00:49, Abraham Cano <abrahamcano76 at gmail.com> wrote:
>>> >
>>> > Greetings
>>> >
>>> > Would you mind telling me if it is possible to open DM4 files?
>>> > I have already installed Bioformat plugins withing Image J, but so far
>>> it seems it only opens DM3 files.
>>> >
>>> > Many thanks in advance!
>>> >
>>> >
>>> > Abraham Cano
>>> > Materials Scientist
>>> >
>>> > <A----0014.dm4>_______________________________________________
>>> > ome-devel mailing list
>>> > ome-devel at lists.openmicroscopy.org.uk
>>> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>>
>>>
>>> The University of Dundee is a registered Scottish Charity, No: SC015096
>>> _______________________________________________
>>> ome-devel mailing list
>>> ome-devel at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>>
>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-devel/attachments/20180208/ec3cb09f/attachment.html>